update flake and poetry

This commit is contained in:
Valentin Boettcher 2022-03-21 13:39:25 +01:00
parent 952c60b2ba
commit 09c01699c9
3 changed files with 328 additions and 293 deletions

View file

@ -14,6 +14,7 @@
shellOverride = (oldAttrs: {
shellHook = ''
export PYTHONPATH=/home/hiro/src/hops/:$PYTHONPATH
export PYTHONPATH=/home/hiro/src/hopsflow/:$PYTHONPATH
export PYTHONPATH=/home/hiro/src/stocproc/:$PYTHONPATH
'';
});

619
poetry.lock generated
View file

@ -6,6 +6,14 @@ category = "main"
optional = false
python-versions = "*"
[[package]]
name = "asteval"
version = "0.9.26"
description = "Safe, minimalistic evaluator of python expression using ast module"
category = "main"
optional = false
python-versions = ">=3.6"
[[package]]
name = "asttokens"
version = "2.0.5"
@ -52,7 +60,7 @@ python-versions = "*"
[[package]]
name = "beartype"
version = "0.10.1"
version = "0.10.4"
description = "Unbearably fast runtime type checking in pure Python."
category = "main"
optional = false
@ -60,9 +68,9 @@ python-versions = ">=3.6.0"
[package.extras]
all = ["typing-extensions (>=3.10.0.0)"]
dev = ["coverage (>=5.5)", "sphinx", "typing-extensions", "mypy (>=0.800)", "numpy", "pytest (>=4.0.0)", "tox (>=3.20.1)", "sphinx (>=4.1.0)"]
dev = ["coverage (>=5.5)", "sphinx", "pytest (>=4.0.0)", "tox (>=3.20.1)", "sphinx (>=4.1.0)", "mypy (>=0.800)", "typing-extensions", "numpy"]
doc-rtd = ["sphinx (==4.1.0)", "sphinx-rtd-theme (==0.5.1)"]
test-tox = ["sphinx", "typing-extensions", "mypy (>=0.800)", "numpy", "pytest (>=4.0.0)"]
test-tox = ["sphinx", "pytest (>=4.0.0)", "mypy (>=0.800)", "typing-extensions", "numpy"]
test-tox-coverage = ["coverage (>=5.5)"]
[[package]]
@ -83,28 +91,6 @@ url = "https://github.com/vale981/binfootprint"
reference = "master"
resolved_reference = "f30a9691a5dab1c288b0fafb95ce35c686e1aa29"
[[package]]
name = "black"
version = "22.1.0"
description = "The uncompromising code formatter."
category = "main"
optional = false
python-versions = ">=3.6.2"
[package.dependencies]
click = ">=8.0.0"
mypy-extensions = ">=0.4.3"
pathspec = ">=0.9.0"
platformdirs = ">=2"
tomli = ">=1.1.0"
typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
[package.extras]
colorama = ["colorama (>=0.4.3)"]
d = ["aiohttp (>=3.7.4)"]
jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
uvloop = ["uvloop (>=0.15.2)"]
[[package]]
name = "click"
version = "8.0.4"
@ -181,7 +167,7 @@ dev = ["tox", "bump2version (<1)", "sphinx (<2)", "importlib-metadata (<3)", "im
[[package]]
name = "executing"
version = "0.8.2"
version = "0.8.3"
description = "Get the currently executing AST node of a frame, and other information"
category = "main"
optional = false
@ -220,7 +206,7 @@ testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-co
[[package]]
name = "fonttools"
version = "4.29.1"
version = "4.31.1"
description = "Tools to manipulate font files"
category = "main"
optional = false
@ -239,9 +225,17 @@ ufo = ["fs (>=2.2.0,<3)"]
unicode = ["unicodedata2 (>=14.0.0)"]
woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"]
[[package]]
name = "future"
version = "0.18.2"
description = "Clean single-source support for Python 3 and 2"
category = "main"
optional = false
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
[[package]]
name = "grpcio"
version = "1.44.0"
version = "1.43.0"
description = "HTTP/2-based RPC framework"
category = "main"
optional = false
@ -251,7 +245,7 @@ python-versions = ">=3.6"
six = ">=1.5.2"
[package.extras]
protobuf = ["grpcio-tools (>=1.44.0)"]
protobuf = ["grpcio-tools (>=1.43.0)"]
[[package]]
name = "h5py"
@ -293,7 +287,30 @@ typer = "^0.4.0"
type = "git"
url = "git@gitlab.hrz.tu-chemnitz.de:s8896854--tu-dresden.de/hops.git"
reference = "BathMemoryTruncation"
resolved_reference = "22ee9b9365203d32f0a755123b678f54237ecfd4"
resolved_reference = "45c6cbe8c8fbe4287f5cc9cab4b7143257d04424"
[[package]]
name = "hopsflow"
version = "1.0.6"
description = "Calculating open system bath energy changes with HOPS and analytically."
category = "main"
optional = false
python-versions = ">=3.9,<3.11"
develop = false
[package.dependencies]
lmfit = "^1.0.3"
numpy = "^1.20.0"
scipy = "^1.7.3"
sqlitedict = "^1.7.0"
stocproc = {git = "https://github.com/vale981/stocproc", branch = "master"}
tqdm = "^4.62.3"
[package.source]
type = "git"
url = "https://github.com/vale981/hopsflow"
reference = "main"
resolved_reference = "02190e54a067806b8b3382f0ab130062e7b9af5c"
[[package]]
name = "humanfriendly"
@ -316,7 +333,7 @@ python-versions = "*"
[[package]]
name = "ipython"
version = "8.0.1"
version = "8.1.1"
description = "IPython: Productive Interactive Computing"
category = "main"
optional = false
@ -325,7 +342,6 @@ python-versions = ">=3.8"
[package.dependencies]
appnope = {version = "*", markers = "sys_platform == \"darwin\""}
backcall = "*"
black = "*"
colorama = {version = "*", markers = "sys_platform == \"win32\""}
decorator = "*"
jedi = ">=0.16"
@ -333,21 +349,22 @@ matplotlib-inline = "*"
pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
pickleshare = "*"
prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
pygments = "*"
pygments = ">=2.4.0"
stack-data = "*"
traitlets = ">=5"
[package.extras]
all = ["Sphinx (>=1.3)", "curio", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.19)", "pandas", "pygments", "pytest", "pytest-asyncio", "qtconsole", "testpath", "trio"]
all = ["black", "Sphinx (>=1.3)", "ipykernel", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.19)", "pandas", "pytest", "testpath", "trio", "pytest-asyncio"]
black = ["black"]
doc = ["Sphinx (>=1.3)"]
kernel = ["ipykernel"]
nbconvert = ["nbconvert"]
nbformat = ["nbformat"]
notebook = ["notebook", "ipywidgets"]
notebook = ["ipywidgets", "notebook"]
parallel = ["ipyparallel"]
qtconsole = ["qtconsole"]
test = ["pytest", "pytest-asyncio", "testpath", "pygments"]
test_extra = ["pytest", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pygments", "trio"]
test = ["pytest", "pytest-asyncio", "testpath"]
test_extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pytest", "testpath", "trio"]
[[package]]
name = "jedi"
@ -382,12 +399,26 @@ format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
[[package]]
name = "kiwisolver"
version = "1.3.2"
version = "1.4.0"
description = "A fast implementation of the Cassowary constraint solver"
category = "main"
optional = false
python-versions = ">=3.7"
[[package]]
name = "lmfit"
version = "1.0.3"
description = "Least-Squares Minimization with Bounds and Constraints"
category = "main"
optional = false
python-versions = ">=3.6"
[package.dependencies]
asteval = ">=0.9.22"
numpy = ">=1.18"
scipy = ">=1.4"
uncertainties = ">=3.0.1"
[[package]]
name = "matplotlib"
version = "3.5.1"
@ -459,13 +490,13 @@ python2 = ["typed-ast (>=1.4.0,<1.5.0)"]
name = "mypy-extensions"
version = "0.4.3"
description = "Experimental type system extensions for programs checked with the mypy typechecker."
category = "main"
category = "dev"
optional = false
python-versions = "*"
[[package]]
name = "numpy"
version = "1.22.2"
version = "1.22.3"
description = "NumPy is the fundamental package for array computing with Python."
category = "main"
optional = false
@ -494,14 +525,6 @@ python-versions = ">=3.6"
qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
testing = ["docopt", "pytest (<6.0.0)"]
[[package]]
name = "pathspec"
version = "0.9.0"
description = "Utility library for gitignore style pattern matching of file paths."
category = "main"
optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
[[package]]
name = "pexpect"
version = "4.8.0"
@ -529,18 +552,6 @@ category = "main"
optional = false
python-versions = ">=3.7"
[[package]]
name = "platformdirs"
version = "2.5.1"
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
category = "main"
optional = false
python-versions = ">=3.7"
[package.extras]
docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"]
[[package]]
name = "pluggy"
version = "1.0.0"
@ -555,7 +566,7 @@ testing = ["pytest", "pytest-benchmark"]
[[package]]
name = "prettytable"
version = "3.1.1"
version = "3.2.0"
description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format"
category = "main"
optional = false
@ -650,11 +661,11 @@ python-versions = ">=3.7"
[[package]]
name = "pytest"
version = "7.0.1"
version = "7.1.1"
description = "pytest: simple powerful testing with Python"
category = "dev"
optional = false
python-versions = ">=3.6"
python-versions = ">=3.7"
[package.dependencies]
atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
@ -710,7 +721,7 @@ tests = ["pytest (>=5.2)", "pytest-rerunfailures"]
[[package]]
name = "ray"
version = "1.10.0"
version = "1.11.0"
description = "Ray provides a simple, universal API for building distributed applications."
category = "main"
optional = false
@ -720,7 +731,7 @@ python-versions = "*"
attrs = "*"
click = ">=7.0"
filelock = "*"
grpcio = ">=1.28.1"
grpcio = ">=1.28.1,<=1.43.0"
jsonschema = "*"
msgpack = ">=1.0.0,<2.0.0"
numpy = {version = ">=1.19.3", markers = "python_version >= \"3.9\""}
@ -729,14 +740,14 @@ pyyaml = "*"
redis = ">=3.5.0"
[package.extras]
all = ["pandas", "colorful", "aiohttp-cors", "scikit-image", "numpy (>=1.19)", "aiosignal", "gpustat (>=1.0.0b1)", "tensorboardX (>=1.9)", "scipy", "aiohttp (>=3.7)", "dm-tree", "ray-cpp (==1.10.0)", "requests", "kubernetes", "frozenlist", "urllib3", "opentelemetry-exporter-otlp (==1.1.0)", "gym", "matplotlib (!=3.4.3)", "smart-open", "fsspec", "opencensus", "aiorwlock", "py-spy (>=0.2.0)", "fastapi", "lz4", "aioredis (<2)", "tabulate", "starlette", "pyarrow (>=4.0.1)", "opentelemetry-api (==1.1.0)", "prometheus-client (>=0.7.1)", "pyyaml", "uvicorn", "opentelemetry-sdk (==1.1.0)"]
cpp = ["ray-cpp (==1.10.0)"]
data = ["pandas", "pyarrow (>=4.0.1)", "fsspec", "numpy (>=1.19)"]
all = ["prometheus-client (>=0.7.1)", "aiorwlock", "gym (<0.22)", "aiohttp-cors", "urllib3", "pyarrow (>=4.0.1,<7.0.0)", "starlette", "aiosignal", "opentelemetry-api (==1.1.0)", "pandas", "smart-open", "lz4", "colorful", "opentelemetry-exporter-otlp (==1.1.0)", "tabulate", "scipy", "py-spy (>=0.2.0)", "opencensus", "pyyaml", "aioredis (<2)", "scikit-image", "gpustat (>=1.0.0b1)", "fsspec", "fastapi", "kubernetes", "opentelemetry-sdk (==1.1.0)", "matplotlib (!=3.4.3)", "numpy (>=1.19)", "aiohttp (>=3.7)", "frozenlist", "requests", "ray-cpp (==1.11.0)", "tensorboardX (>=1.9)", "dm-tree", "uvicorn (==0.16.0)"]
cpp = ["ray-cpp (==1.11.0)"]
data = ["pandas", "pyarrow (>=4.0.1,<7.0.0)", "fsspec", "numpy (>=1.19)"]
default = ["aiohttp (>=3.7)", "aiosignal", "aiohttp-cors", "aioredis (<2)", "colorful", "frozenlist", "py-spy (>=0.2.0)", "requests", "gpustat (>=1.0.0b1)", "opencensus", "prometheus-client (>=0.7.1)", "smart-open"]
k8s = ["kubernetes", "urllib3"]
observability = ["opentelemetry-api (==1.1.0)", "opentelemetry-sdk (==1.1.0)", "opentelemetry-exporter-otlp (==1.1.0)"]
rllib = ["pandas", "tabulate", "tensorboardX (>=1.9)", "requests", "dm-tree", "gym", "lz4", "matplotlib (!=3.4.3)", "scikit-image", "pyyaml", "scipy"]
serve = ["frozenlist", "starlette", "aiohttp-cors", "colorful", "aiosignal", "gpustat (>=1.0.0b1)", "prometheus-client (>=0.7.1)", "aiorwlock", "opencensus", "py-spy (>=0.2.0)", "requests", "fastapi", "aiohttp (>=3.7)", "smart-open", "uvicorn", "aioredis (<2)"]
rllib = ["pandas", "tabulate", "tensorboardX (>=1.9)", "requests", "dm-tree", "gym (<0.22)", "lz4", "matplotlib (!=3.4.3)", "scikit-image", "pyyaml", "scipy"]
serve = ["fastapi", "starlette", "prometheus-client (>=0.7.1)", "aiosignal", "py-spy (>=0.2.0)", "aiohttp (>=3.7)", "requests", "frozenlist", "opencensus", "smart-open", "aiorwlock", "aioredis (<2)", "colorful", "gpustat (>=1.0.0b1)", "uvicorn (==0.16.0)", "aiohttp-cors"]
tune = ["pandas", "tabulate", "tensorboardX (>=1.9)", "requests"]
[[package]]
@ -790,6 +801,14 @@ category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
[[package]]
name = "sqlitedict"
version = "1.7.0"
description = "Persistent dict in Python, backed up by sqlite3 and pickle, multithread-safe."
category = "main"
optional = false
python-versions = "*"
[[package]]
name = "stack-data"
version = "0.2.0"
@ -845,7 +864,7 @@ python-versions = ">=3.7"
[[package]]
name = "tqdm"
version = "4.62.3"
version = "4.63.0"
description = "Fast, Extensible Progress Meter"
category = "main"
optional = false
@ -891,10 +910,27 @@ test = ["shellingham (>=1.3.0,<2.0.0)", "pytest (>=4.4.0,<5.4.0)", "pytest-cov (
name = "typing-extensions"
version = "4.1.1"
description = "Backported and Experimental Type Hints for Python 3.6+"
category = "main"
category = "dev"
optional = false
python-versions = ">=3.6"
[[package]]
name = "uncertainties"
version = "3.1.6"
description = "Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives"
category = "main"
optional = false
python-versions = "*"
[package.dependencies]
future = "*"
[package.extras]
all = ["numpy", "sphinx", "nose"]
docs = ["sphinx"]
optional = ["numpy"]
tests = ["nose", "numpy"]
[[package]]
name = "wcwidth"
version = "0.2.5"
@ -905,7 +941,7 @@ python-versions = "*"
[[package]]
name = "wrapt"
version = "1.13.3"
version = "1.14.0"
description = "Module for decorators, wrappers and monkey patching."
category = "main"
optional = false
@ -914,13 +950,16 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
[metadata]
lock-version = "1.1"
python-versions = ">=3.9,<3.11"
content-hash = "ba1521fe96275442a9a2a757978968604e7947d3e0fe7b715f4585a8b800ef1b"
content-hash = "52d49683b9b55fdddc4dd7a1118bd95e322c0742fa714bfab12ae25c43f23d4d"
[metadata.files]
appnope = [
{file = "appnope-0.1.2-py2.py3-none-any.whl", hash = "sha256:93aa393e9d6c54c5cd570ccadd8edad61ea0c4b9ea7a01409020c9aa019eb442"},
{file = "appnope-0.1.2.tar.gz", hash = "sha256:dd83cd4b5b460958838f6eb3000c660b1f9caf2a5b1de4264e941512f603258a"},
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asteval = [
{file = "asteval-0.9.26.tar.gz", hash = "sha256:36125613ec21ed3e33e370ca8960a1f1e8a2324d78a8016bfa5ad76f1e16ef05"},
]
asttokens = [
{file = "asttokens-2.0.5-py2.py3-none-any.whl", hash = "sha256:0844691e88552595a6f4a4281a9f7f79b8dd45ca4ccea82e5e05b4bbdb76705c"},
{file = "asttokens-2.0.5.tar.gz", hash = "sha256:9a54c114f02c7a9480d56550932546a3f1fe71d8a02f1bc7ccd0ee3ee35cf4d5"},
@ -938,35 +977,10 @@ backcall = [
{file = "backcall-0.2.0.tar.gz", hash = "sha256:5cbdbf27be5e7cfadb448baf0aa95508f91f2bbc6c6437cd9cd06e2a4c215e1e"},
]
beartype = [
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{file = "beartype-0.10.1.tar.gz", hash = "sha256:ef228e66938b4f4487d8b306a1d19a0938bc4ef244b6162309f423ccc8cefc76"},
{file = "beartype-0.10.4-py3-none-any.whl", hash = "sha256:1a65453bc25b39979bf5ad65fe5e73350551282956456d828fb5783468649e3e"},
{file = "beartype-0.10.4.tar.gz", hash = "sha256:24ec69f6a7f4e6e97af403d08de270def3248518060327095d23b1c4df64bf2a"},
]
binfootprint = []
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View file

@ -10,6 +10,7 @@ repository = "https://github.com/vale981/two_qubit_model"
python = ">=3.9,<3.11"
numpy = "^1.20.0"
qutip = "^4.6.3"
hopsflow = { git = "https://github.com/vale981/hopsflow", branch="main" }
hops = { git = "git@gitlab.hrz.tu-chemnitz.de:s8896854--tu-dresden.de/hops.git", branch="BathMemoryTruncation" }
beartype = "^0.10.1"