mirror of
https://github.com/vale981/ray
synced 2025-03-06 02:21:39 -05:00
Merge numbuf.
This commit is contained in:
Philipp Moritz
commit
0b888c38f1
31 changed files with 2125 additions and 0 deletions
32
numbuf/.gitignore
vendored
Normal file
32
numbuf/.gitignore
vendored
Normal file
|
|
@ -0,0 +1,32 @@
|
|||
# Compiled Object files
|
||||
*.slo
|
||||
*.lo
|
||||
*.o
|
||||
*.obj
|
||||
|
||||
# Precompiled Headers
|
||||
*.gch
|
||||
*.pch
|
||||
|
||||
# Compiled Dynamic libraries
|
||||
*.so
|
||||
*.dylib
|
||||
*.dll
|
||||
|
||||
# Fortran module files
|
||||
*.mod
|
||||
*.smod
|
||||
|
||||
# Compiled Static libraries
|
||||
*.lai
|
||||
*.la
|
||||
*.a
|
||||
*.lib
|
||||
|
||||
# Executables
|
||||
*.exe
|
||||
*.out
|
||||
*.app
|
||||
|
||||
# Build directory
|
||||
build
|
||||
3
numbuf/.gitmodules
vendored
Normal file
3
numbuf/.gitmodules
vendored
Normal file
|
|
@ -0,0 +1,3 @@
|
|||
[submodule "thirdparty/arrow"]
|
||||
path = thirdparty/arrow
|
||||
url = https://github.com/pcmoritz/arrow.git
|
||||
25
numbuf/.travis.yml
Normal file
25
numbuf/.travis.yml
Normal file
|
|
@ -0,0 +1,25 @@
|
|||
sudo: required
|
||||
|
||||
language: generic
|
||||
|
||||
matrix:
|
||||
include:
|
||||
- os: linux
|
||||
dist: trusty
|
||||
python: "2.7"
|
||||
- os: linux
|
||||
dist: trusty
|
||||
python: "3.5"
|
||||
- os: osx
|
||||
osx_image: xcode7
|
||||
python: "2.7"
|
||||
- os: osx
|
||||
osx_image: xcode7
|
||||
python: "3.5"
|
||||
|
||||
install:
|
||||
- ./install-dependencies.sh
|
||||
- python setup.py install --user
|
||||
|
||||
script:
|
||||
- python python/test/runtest.py
|
||||
113
numbuf/CMakeLists.txt
Normal file
113
numbuf/CMakeLists.txt
Normal file
|
|
@ -0,0 +1,113 @@
|
|||
cmake_minimum_required(VERSION 2.8)
|
||||
|
||||
project(numbuf)
|
||||
|
||||
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake/Modules)
|
||||
|
||||
# Make libnumbuf.so look for shared libraries in the folder libnumbuf.so is in
|
||||
set(CMAKE_INSTALL_RPATH "$ORIGIN/")
|
||||
set(CMAKE_MACOSX_RPATH 1)
|
||||
|
||||
if(NOT APPLE)
|
||||
find_package(PythonInterp REQUIRED)
|
||||
find_package(PythonLibs REQUIRED)
|
||||
set(CUSTOM_PYTHON_EXECUTABLE ${PYTHON_EXECUTABLE})
|
||||
else()
|
||||
find_program(CUSTOM_PYTHON_EXECUTABLE python)
|
||||
message("-- Found Python program: ${CUSTOM_PYTHON_EXECUTABLE}")
|
||||
execute_process(COMMAND ${CUSTOM_PYTHON_EXECUTABLE} -c
|
||||
"import sys; print 'python' + sys.version[0:3]"
|
||||
OUTPUT_VARIABLE PYTHON_LIBRARY_NAME OUTPUT_STRIP_TRAILING_WHITESPACE)
|
||||
execute_process(COMMAND ${CUSTOM_PYTHON_EXECUTABLE} -c
|
||||
"import sys; print sys.exec_prefix"
|
||||
OUTPUT_VARIABLE PYTHON_PREFIX OUTPUT_STRIP_TRAILING_WHITESPACE)
|
||||
FIND_LIBRARY(PYTHON_LIBRARIES
|
||||
NAMES ${PYTHON_LIBRARY_NAME}
|
||||
HINTS "${PYTHON_PREFIX}"
|
||||
PATH_SUFFIXES "lib" "libs"
|
||||
NO_DEFAULT_PATH)
|
||||
execute_process(COMMAND ${CUSTOM_PYTHON_EXECUTABLE} -c
|
||||
"from distutils.sysconfig import *; print get_python_inc()"
|
||||
OUTPUT_VARIABLE PYTHON_INCLUDE_DIRS OUTPUT_STRIP_TRAILING_WHITESPACE)
|
||||
if(PYTHON_LIBRARIES AND PYTHON_INCLUDE_DIRS)
|
||||
SET(PYTHONLIBS_FOUND TRUE)
|
||||
message("-- Found PythonLibs: " ${PYTHON_LIBRARIES})
|
||||
message("-- -- Used custom search path")
|
||||
else()
|
||||
find_package(PythonLibs REQUIRED)
|
||||
message("-- -- Used find_package(PythonLibs)")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
find_package(NumPy REQUIRED)
|
||||
|
||||
if(APPLE)
|
||||
SET(CMAKE_SHARED_LIBRARY_SUFFIX ".so")
|
||||
endif(APPLE)
|
||||
|
||||
include_directories("${PYTHON_INCLUDE_DIRS}")
|
||||
include_directories("${NUMPY_INCLUDE_DIR}")
|
||||
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11")
|
||||
|
||||
if (UNIX AND NOT APPLE)
|
||||
link_libraries(rt)
|
||||
endif()
|
||||
|
||||
set(ARROW_DIR "${CMAKE_SOURCE_DIR}/thirdparty/arrow/" CACHE STRING
|
||||
"Path of the arrow source directory")
|
||||
|
||||
if (APPLE)
|
||||
set(ARROW_LIB "${CMAKE_SOURCE_DIR}/thirdparty/arrow/cpp/build/release/libarrow.dylib" CACHE STRING
|
||||
"Path to libarrow.dylib (needs to be changed if arrow is build in debug mode)")
|
||||
|
||||
set(ARROW_IO_LIB "${CMAKE_SOURCE_DIR}/thirdparty/arrow/cpp/build/release/libarrow_io.dylib" CACHE STRING
|
||||
"Path to libarrow_io.dylib (needs to be changed if arrow is build in debug mode)")
|
||||
|
||||
set(ARROW_IPC_LIB "${CMAKE_SOURCE_DIR}/thirdparty/arrow/cpp/build/release/libarrow_ipc.dylib" CACHE STRING
|
||||
"Path to libarrow_ipc.dylib (needs to be changed if arrow is build in debug mode)")
|
||||
else()
|
||||
set(ARROW_LIB "${CMAKE_SOURCE_DIR}/thirdparty/arrow/cpp/build/release/libarrow.so" CACHE STRING
|
||||
"Path to libarrow.so (needs to be changed if arrow is build in debug mode)")
|
||||
|
||||
set(ARROW_IO_LIB "${CMAKE_SOURCE_DIR}/thirdparty/arrow/cpp/build/release/libarrow_io.so" CACHE STRING
|
||||
"Path to libarrow_io.so (needs to be changed if arrow is build in debug mode)")
|
||||
|
||||
set(ARROW_IPC_LIB "${CMAKE_SOURCE_DIR}/thirdparty/arrow/cpp/build/release/libarrow_ipc.so" CACHE STRING
|
||||
"Path to libarrow_ipc.so (needs to be changed if arrow is build in debug mode)")
|
||||
endif()
|
||||
|
||||
include_directories("${ARROW_DIR}/cpp/src/")
|
||||
include_directories("cpp/src/")
|
||||
include_directories("python/src/")
|
||||
|
||||
add_definitions(-fPIC)
|
||||
|
||||
add_library(numbuf SHARED
|
||||
cpp/src/numbuf/tensor.cc
|
||||
cpp/src/numbuf/dict.cc
|
||||
cpp/src/numbuf/sequence.cc
|
||||
python/src/pynumbuf/numbuf.cc
|
||||
python/src/pynumbuf/adapters/numpy.cc
|
||||
python/src/pynumbuf/adapters/python.cc)
|
||||
|
||||
get_filename_component(PYTHON_SHARED_LIBRARY ${PYTHON_LIBRARIES} NAME)
|
||||
if(APPLE)
|
||||
add_custom_command(TARGET numbuf
|
||||
POST_BUILD COMMAND
|
||||
${CMAKE_INSTALL_NAME_TOOL} -change ${PYTHON_SHARED_LIBRARY} ${PYTHON_LIBRARIES} libnumbuf.so)
|
||||
add_custom_command(TARGET numbuf
|
||||
POST_BUILD COMMAND
|
||||
${CMAKE_INSTALL_NAME_TOOL} -change "@rpath/libarrow.dylib" "@loader_path/libarrow.dylib" libnumbuf.so)
|
||||
add_custom_command(TARGET numbuf
|
||||
POST_BUILD COMMAND
|
||||
${CMAKE_INSTALL_NAME_TOOL} -change "@rpath/libarrow_io.dylib" "@loader_path/libarrow_io.dylib" libnumbuf.so)
|
||||
add_custom_command(TARGET numbuf
|
||||
POST_BUILD COMMAND
|
||||
${CMAKE_INSTALL_NAME_TOOL} -change "@rpath/libarrow_ipc.dylib" "@loader_path/libarrow_ipc.dylib" libnumbuf.so)
|
||||
endif(APPLE)
|
||||
|
||||
target_link_libraries(numbuf ${ARROW_LIB} ${ARROW_IO_LIB} ${ARROW_IPC_LIB} ${PYTHON_LIBRARIES})
|
||||
|
||||
install(TARGETS numbuf DESTINATION ${CMAKE_SOURCE_DIR}/numbuf/)
|
||||
install(FILES ${ARROW_LIB} ${ARROW_IO_LIB} ${ARROW_IPC_LIB} DESTINATION ${CMAKE_SOURCE_DIR}/numbuf/)
|
||||
201
numbuf/LICENSE
Normal file
201
numbuf/LICENSE
Normal file
|
|
@ -0,0 +1,201 @@
|
|||
Apache License
|
||||
Version 2.0, January 2004
|
||||
http://www.apache.org/licenses/
|
||||
|
||||
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
||||
|
||||
1. Definitions.
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|
||||
"License" shall mean the terms and conditions for use, reproduction,
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and distribution as defined by Sections 1 through 9 of this document.
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||||
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2
numbuf/README.md
Normal file
2
numbuf/README.md
Normal file
|
|
@ -0,0 +1,2 @@
|
|||
# numbuf
|
||||
Serializing primitive Python types in Arrow
|
||||
20
numbuf/build.sh
Executable file
20
numbuf/build.sh
Executable file
|
|
@ -0,0 +1,20 @@
|
|||
#!/usr/bin/env bash
|
||||
|
||||
ROOT_DIR=$(cd "$(dirname "${BASH_SOURCE:-$0}")"; pwd)
|
||||
|
||||
# Determine how many parallel jobs to use for make based on the number of cores
|
||||
unamestr="$(uname)"
|
||||
if [[ "$unamestr" == "Linux" ]]; then
|
||||
PARALLEL=$(nproc)
|
||||
elif [[ "$unamestr" == "Darwin" ]]; then
|
||||
PARALLEL=$(sysctl -n hw.ncpu)
|
||||
else
|
||||
echo "Unrecognized platform."
|
||||
exit 1
|
||||
fi
|
||||
|
||||
mkdir -p "$ROOT_DIR/build"
|
||||
pushd "$ROOT_DIR/build"
|
||||
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_FLAGS="-g" -DCMAKE_CXX_FLAGS="-g" ..
|
||||
make install -j$PARALLEL
|
||||
popd
|
||||
54
numbuf/cmake/Modules/FindNumPy.cmake
Normal file
54
numbuf/cmake/Modules/FindNumPy.cmake
Normal file
|
|
@ -0,0 +1,54 @@
|
|||
# - Find the NumPy libraries
|
||||
# This module finds if NumPy is installed, and sets the following variables
|
||||
# indicating where it is.
|
||||
#
|
||||
#
|
||||
# NUMPY_FOUND - was NumPy found
|
||||
# NUMPY_VERSION - the version of NumPy found as a string
|
||||
# NUMPY_VERSION_MAJOR - the major version number of NumPy
|
||||
# NUMPY_VERSION_MINOR - the minor version number of NumPy
|
||||
# NUMPY_VERSION_PATCH - the patch version number of NumPy
|
||||
# NUMPY_VERSION_DECIMAL - e.g. version 1.6.1 is 10601
|
||||
# NUMPY_INCLUDE_DIR - path to the NumPy include files
|
||||
|
||||
unset(NUMPY_VERSION)
|
||||
unset(NUMPY_INCLUDE_DIR)
|
||||
|
||||
if(NOT "${CUSTOM_PYTHON_EXECUTABLE}" STREQUAL "CUSTOM_PYTHON_EXECUTABLE-NOTFOUND")
|
||||
execute_process(COMMAND "${CUSTOM_PYTHON_EXECUTABLE}" "-c"
|
||||
"import numpy as n; print(n.__version__); print(n.get_include());"
|
||||
RESULT_VARIABLE __result
|
||||
OUTPUT_VARIABLE __output
|
||||
OUTPUT_STRIP_TRAILING_WHITESPACE)
|
||||
|
||||
if(__result MATCHES 0)
|
||||
string(REGEX REPLACE ";" "\\\\;" __values ${__output})
|
||||
string(REGEX REPLACE "\r?\n" ";" __values ${__values})
|
||||
list(GET __values 0 NUMPY_VERSION)
|
||||
list(GET __values 1 NUMPY_INCLUDE_DIR)
|
||||
|
||||
string(REGEX MATCH "^([0-9])+\\.([0-9])+\\.([0-9])+" __ver_check "${NUMPY_VERSION}")
|
||||
if(NOT "${__ver_check}" STREQUAL "")
|
||||
set(NUMPY_VERSION_MAJOR ${CMAKE_MATCH_1})
|
||||
set(NUMPY_VERSION_MINOR ${CMAKE_MATCH_2})
|
||||
set(NUMPY_VERSION_PATCH ${CMAKE_MATCH_3})
|
||||
math(EXPR NUMPY_VERSION_DECIMAL
|
||||
"(${NUMPY_VERSION_MAJOR} * 10000) + (${NUMPY_VERSION_MINOR} * 100) + ${NUMPY_VERSION_PATCH}")
|
||||
string(REGEX REPLACE "\\\\" "/" NUMPY_INCLUDE_DIR ${NUMPY_INCLUDE_DIR})
|
||||
else()
|
||||
unset(NUMPY_VERSION)
|
||||
unset(NUMPY_INCLUDE_DIR)
|
||||
message(STATUS "Requested NumPy version and include path, but got instead:\n${__output}\n")
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
message(STATUS "To find NumPy Python executable is required to be found.")
|
||||
endif()
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
find_package_handle_standard_args(NumPy REQUIRED_VARS NUMPY_INCLUDE_DIR NUMPY_VERSION
|
||||
VERSION_VAR NUMPY_VERSION)
|
||||
|
||||
if(NUMPY_FOUND)
|
||||
message(STATUS "NumPy ver. ${NUMPY_VERSION} found (include: ${NUMPY_INCLUDE_DIR})")
|
||||
endif()
|
||||
27
numbuf/cpp/src/numbuf/dict.cc
Normal file
27
numbuf/cpp/src/numbuf/dict.cc
Normal file
|
|
@ -0,0 +1,27 @@
|
|||
#include "dict.h"
|
||||
|
||||
using namespace arrow;
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
Status DictBuilder::Finish(
|
||||
std::shared_ptr<Array> key_tuple_data,
|
||||
std::shared_ptr<Array> val_list_data,
|
||||
std::shared_ptr<Array> val_tuple_data,
|
||||
std::shared_ptr<Array> val_dict_data,
|
||||
std::shared_ptr<arrow::Array>* out) {
|
||||
// lists and dicts can't be keys of dicts in Python, that is why for
|
||||
// the keys we do not need to collect sublists
|
||||
std::shared_ptr<Array> keys, vals;
|
||||
RETURN_NOT_OK(keys_.Finish(nullptr, key_tuple_data, nullptr, &keys));
|
||||
RETURN_NOT_OK(vals_.Finish(val_list_data, val_tuple_data, val_dict_data, &vals));
|
||||
auto keys_field = std::make_shared<Field>("keys", keys->type());
|
||||
auto vals_field = std::make_shared<Field>("vals", vals->type());
|
||||
auto type = std::make_shared<StructType>(std::vector<FieldPtr>({keys_field, vals_field}));
|
||||
std::vector<ArrayPtr> field_arrays({keys, vals});
|
||||
DCHECK(keys->length() == vals->length());
|
||||
out->reset(new StructArray(type, keys->length(), field_arrays));
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
}
|
||||
50
numbuf/cpp/src/numbuf/dict.h
Normal file
50
numbuf/cpp/src/numbuf/dict.h
Normal file
|
|
@ -0,0 +1,50 @@
|
|||
#ifndef NUMBUF_DICT_H
|
||||
#define NUMBUF_DICT_H
|
||||
|
||||
#include <arrow/api.h>
|
||||
|
||||
#include "sequence.h"
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
/*! Constructing dictionaries of key/value pairs. Sequences of
|
||||
keys and values are built separately using a pair of
|
||||
SequenceBuilders. The resulting Arrow representation
|
||||
can be obtained via the Finish method.
|
||||
*/
|
||||
class DictBuilder {
|
||||
public:
|
||||
DictBuilder(arrow::MemoryPool* pool = nullptr)
|
||||
: keys_(pool), vals_(pool) {}
|
||||
|
||||
//! Builder for the keys of the dictionary
|
||||
SequenceBuilder& keys() { return keys_; }
|
||||
//! Builder for the values of the dictionary
|
||||
SequenceBuilder& vals() { return vals_; }
|
||||
|
||||
/*! Construct an Arrow StructArray representing the dictionary.
|
||||
Contains a field "keys" for the keys and "vals" for the values.
|
||||
|
||||
\param list_data
|
||||
List containing the data from nested lists in the value
|
||||
list of the dictionary
|
||||
|
||||
\param dict_data
|
||||
List containing the data from nested dictionaries in the
|
||||
value list of the dictionary
|
||||
*/
|
||||
arrow::Status Finish(
|
||||
std::shared_ptr<arrow::Array> key_tuple_data,
|
||||
std::shared_ptr<arrow::Array> val_list_data,
|
||||
std::shared_ptr<arrow::Array> val_tuple_data,
|
||||
std::shared_ptr<arrow::Array> val_dict_data,
|
||||
std::shared_ptr<arrow::Array>* out);
|
||||
|
||||
private:
|
||||
SequenceBuilder keys_;
|
||||
SequenceBuilder vals_;
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
183
numbuf/cpp/src/numbuf/sequence.cc
Normal file
183
numbuf/cpp/src/numbuf/sequence.cc
Normal file
|
|
@ -0,0 +1,183 @@
|
|||
#include "sequence.h"
|
||||
|
||||
using namespace arrow;
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
SequenceBuilder::SequenceBuilder(MemoryPool* pool)
|
||||
: pool_(pool),
|
||||
types_(pool, std::make_shared<Int8Type>()),
|
||||
offsets_(pool, std::make_shared<Int32Type>()),
|
||||
nones_(pool, std::make_shared<NullType>()),
|
||||
bools_(pool, std::make_shared<BooleanType>()),
|
||||
ints_(pool, std::make_shared<Int64Type>()),
|
||||
bytes_(pool, std::make_shared<BinaryType>()),
|
||||
strings_(pool, std::make_shared<StringType>()),
|
||||
floats_(pool, std::make_shared<FloatType>()),
|
||||
doubles_(pool, std::make_shared<DoubleType>()),
|
||||
uint8_tensors_(std::make_shared<UInt8Type>(), pool),
|
||||
int8_tensors_(std::make_shared<Int8Type>(), pool),
|
||||
uint16_tensors_(std::make_shared<UInt16Type>(), pool),
|
||||
int16_tensors_(std::make_shared<Int16Type>(), pool),
|
||||
uint32_tensors_(std::make_shared<UInt32Type>(), pool),
|
||||
int32_tensors_(std::make_shared<Int32Type>(), pool),
|
||||
uint64_tensors_(std::make_shared<UInt64Type>(), pool),
|
||||
int64_tensors_(std::make_shared<Int64Type>(), pool),
|
||||
float_tensors_(std::make_shared<FloatType>(), pool),
|
||||
double_tensors_(std::make_shared<DoubleType>(), pool),
|
||||
list_offsets_({0}), tuple_offsets_({0}), dict_offsets_({0}) {}
|
||||
|
||||
#define UPDATE(OFFSET, TAG) \
|
||||
if (TAG == -1) { \
|
||||
TAG = num_tags; \
|
||||
num_tags += 1; \
|
||||
} \
|
||||
RETURN_NOT_OK(offsets_.Append(OFFSET)); \
|
||||
RETURN_NOT_OK(types_.Append(TAG)); \
|
||||
RETURN_NOT_OK(nones_.AppendToBitmap(true));
|
||||
|
||||
Status SequenceBuilder::AppendNone() {
|
||||
RETURN_NOT_OK(offsets_.Append(0));
|
||||
RETURN_NOT_OK(types_.Append(0));
|
||||
return nones_.AppendToBitmap(false);
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendBool(bool data) {
|
||||
UPDATE(bools_.length(), bool_tag);
|
||||
return bools_.Append(data);
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendInt64(int64_t data) {
|
||||
UPDATE(ints_.length(), int_tag);
|
||||
return ints_.Append(data);
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendUInt64(uint64_t data) {
|
||||
UPDATE(ints_.length(), int_tag);
|
||||
return ints_.Append(data);
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendBytes(const uint8_t* data, int32_t length) {
|
||||
UPDATE(bytes_.length(), bytes_tag);
|
||||
return bytes_.Append(data, length);
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendString(const char* data, int32_t length) {
|
||||
UPDATE(strings_.length(), string_tag);
|
||||
return strings_.Append(data, length);
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendFloat(float data) {
|
||||
UPDATE(floats_.length(), float_tag);
|
||||
return floats_.Append(data);
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendDouble(double data) {
|
||||
UPDATE(doubles_.length(), double_tag);
|
||||
return doubles_.Append(data);
|
||||
}
|
||||
|
||||
#define DEF_TENSOR_APPEND(NAME, TYPE, TAG) \
|
||||
Status SequenceBuilder::AppendTensor(const std::vector<int64_t>& dims, TYPE* data) { \
|
||||
if (TAG == -1) { \
|
||||
NAME.Start(); \
|
||||
} \
|
||||
UPDATE(NAME.length(), TAG); \
|
||||
return NAME.Append(dims, data); \
|
||||
}
|
||||
|
||||
DEF_TENSOR_APPEND(uint8_tensors_, uint8_t, uint8_tensor_tag);
|
||||
DEF_TENSOR_APPEND(int8_tensors_, int8_t, int8_tensor_tag);
|
||||
DEF_TENSOR_APPEND(uint16_tensors_, uint16_t, uint16_tensor_tag);
|
||||
DEF_TENSOR_APPEND(int16_tensors_, int16_t, int16_tensor_tag);
|
||||
DEF_TENSOR_APPEND(uint32_tensors_, uint32_t, uint32_tensor_tag);
|
||||
DEF_TENSOR_APPEND(int32_tensors_, int32_t, int32_tensor_tag);
|
||||
DEF_TENSOR_APPEND(uint64_tensors_, uint64_t, uint64_tensor_tag);
|
||||
DEF_TENSOR_APPEND(int64_tensors_, int64_t, int64_tensor_tag);
|
||||
DEF_TENSOR_APPEND(float_tensors_, float, float_tensor_tag);
|
||||
DEF_TENSOR_APPEND(double_tensors_, double, double_tensor_tag);
|
||||
|
||||
Status SequenceBuilder::AppendList(int32_t size) {
|
||||
UPDATE(list_offsets_.size() - 1, list_tag);
|
||||
list_offsets_.push_back(list_offsets_.back() + size);
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendTuple(int32_t size) {
|
||||
UPDATE(tuple_offsets_.size() - 1, tuple_tag);
|
||||
tuple_offsets_.push_back(tuple_offsets_.back() + size);
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
Status SequenceBuilder::AppendDict(int32_t size) {
|
||||
UPDATE(dict_offsets_.size() - 1, dict_tag);
|
||||
dict_offsets_.push_back(dict_offsets_.back() + size);
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
#define ADD_ELEMENT(VARNAME, TAG) \
|
||||
if (TAG != -1) { \
|
||||
types[TAG] = std::make_shared<Field>("", VARNAME.type()); \
|
||||
RETURN_NOT_OK(VARNAME.Finish(&children[TAG])); \
|
||||
RETURN_NOT_OK(nones_.AppendToBitmap(true)); \
|
||||
}
|
||||
|
||||
#define ADD_SUBSEQUENCE(DATA, OFFSETS, BUILDER, TAG, NAME) \
|
||||
if (DATA) { \
|
||||
DCHECK(DATA->length() == OFFSETS.back()); \
|
||||
auto list_builder = std::make_shared<ListBuilder>(pool_, DATA); \
|
||||
auto field = std::make_shared<Field>(NAME, list_builder->type()); \
|
||||
auto type = std::make_shared<StructType>(std::vector<FieldPtr>({field})); \
|
||||
auto lists = std::vector<std::shared_ptr<ArrayBuilder>>({list_builder}); \
|
||||
StructBuilder builder(pool_, type, lists); \
|
||||
OFFSETS.pop_back(); \
|
||||
ARROW_CHECK_OK(list_builder->Append(OFFSETS.data(), OFFSETS.size())); \
|
||||
builder.Append(); \
|
||||
ADD_ELEMENT(builder, TAG); \
|
||||
} else { \
|
||||
DCHECK(OFFSETS.size() == 1); \
|
||||
}
|
||||
|
||||
Status SequenceBuilder::Finish(
|
||||
std::shared_ptr<Array> list_data,
|
||||
std::shared_ptr<Array> tuple_data,
|
||||
std::shared_ptr<Array> dict_data,
|
||||
std::shared_ptr<Array>* out) {
|
||||
|
||||
std::vector<std::shared_ptr<Field>> types(num_tags);
|
||||
std::vector<ArrayPtr> children(num_tags);
|
||||
|
||||
ADD_ELEMENT(bools_, bool_tag);
|
||||
ADD_ELEMENT(ints_, int_tag);
|
||||
ADD_ELEMENT(strings_, string_tag);
|
||||
ADD_ELEMENT(bytes_, bytes_tag);
|
||||
ADD_ELEMENT(floats_, float_tag);
|
||||
ADD_ELEMENT(doubles_, double_tag);
|
||||
|
||||
ADD_ELEMENT(uint8_tensors_, uint8_tensor_tag);
|
||||
|
||||
ADD_ELEMENT(int8_tensors_, int8_tensor_tag);
|
||||
ADD_ELEMENT(uint16_tensors_, uint16_tensor_tag);
|
||||
ADD_ELEMENT(int16_tensors_, int16_tensor_tag);
|
||||
ADD_ELEMENT(uint32_tensors_, uint32_tensor_tag);
|
||||
|
||||
ADD_ELEMENT(int32_tensors_, int32_tensor_tag);
|
||||
ADD_ELEMENT(uint64_tensors_, uint64_tensor_tag);
|
||||
ADD_ELEMENT(int64_tensors_, int64_tensor_tag);
|
||||
|
||||
ADD_ELEMENT(float_tensors_, float_tensor_tag);
|
||||
ADD_ELEMENT(double_tensors_, double_tensor_tag);
|
||||
|
||||
ADD_SUBSEQUENCE(list_data, list_offsets_, list_builder, list_tag, "list");
|
||||
ADD_SUBSEQUENCE(tuple_data, tuple_offsets_, tuple_builder, tuple_tag, "tuple");
|
||||
ADD_SUBSEQUENCE(dict_data, dict_offsets_, dict_builder, dict_tag, "dict");
|
||||
|
||||
std::vector<uint8_t> type_ids = {};
|
||||
TypePtr type = TypePtr(new UnionType(types, type_ids, UnionMode::DENSE));
|
||||
out->reset(new UnionArray(type, types_.length(),
|
||||
children, types_.data(), offsets_.data(),
|
||||
nones_.null_count(), nones_.null_bitmap()));
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
}
|
||||
144
numbuf/cpp/src/numbuf/sequence.h
Normal file
144
numbuf/cpp/src/numbuf/sequence.h
Normal file
|
|
@ -0,0 +1,144 @@
|
|||
#ifndef NUMBUF_LIST_H
|
||||
#define NUMBUF_LIST_H
|
||||
|
||||
#include <arrow/api.h>
|
||||
#include <arrow/types/union.h>
|
||||
#include "tensor.h"
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
/*! A Sequence is a heterogeneous collections of elements. It can contain
|
||||
scalar Python types, lists, tuples, dictionaries and tensors.
|
||||
*/
|
||||
class SequenceBuilder {
|
||||
public:
|
||||
SequenceBuilder(arrow::MemoryPool* pool = nullptr);
|
||||
|
||||
//! Appending a none to the sequence
|
||||
arrow::Status AppendNone();
|
||||
|
||||
//! Appending a boolean to the sequence
|
||||
arrow::Status AppendBool(bool data);
|
||||
|
||||
//! Appending an int64_t to the sequence
|
||||
arrow::Status AppendInt64(int64_t data);
|
||||
|
||||
//! Appending an uint64_t to the sequence
|
||||
arrow::Status AppendUInt64(uint64_t data);
|
||||
|
||||
//! Append a list of bytes to the sequence
|
||||
arrow::Status AppendBytes(const uint8_t* data, int32_t length);
|
||||
|
||||
//! Appending a string to the sequence
|
||||
arrow::Status AppendString(const char* data, int32_t length);
|
||||
|
||||
//! Appending a float to the sequence
|
||||
arrow::Status AppendFloat(float data);
|
||||
|
||||
//! Appending a double to the sequence
|
||||
arrow::Status AppendDouble(double data);
|
||||
|
||||
/*! Appending a tensor to the sequence
|
||||
|
||||
\param dims
|
||||
A vector of dimensions
|
||||
|
||||
\param data
|
||||
A pointer to the start of the data block. The length of the data block
|
||||
will be the product of the dimensions
|
||||
*/
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, uint8_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, int8_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, uint16_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, int16_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, uint32_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, int32_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, uint64_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, int64_t* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, float* data);
|
||||
arrow::Status AppendTensor(const std::vector<int64_t>& dims, double* data);
|
||||
|
||||
/*! Add a sublist to the sequenc. The data contained in the sublist will be
|
||||
specified in the "Finish" method.
|
||||
|
||||
To construct l = [[11, 22], 33, [44, 55]] you would for example run
|
||||
list = ListBuilder();
|
||||
list.AppendList(2);
|
||||
list.Append(33);
|
||||
list.AppendList(2);
|
||||
list.Finish([11, 22, 44, 55]);
|
||||
list.Finish();
|
||||
|
||||
\param size
|
||||
The size of the sublist
|
||||
*/
|
||||
arrow::Status AppendList(int32_t size);
|
||||
|
||||
arrow::Status AppendTuple(int32_t size);
|
||||
|
||||
arrow::Status AppendDict(int32_t size);
|
||||
|
||||
//! Finish building the sequence and return the result
|
||||
arrow::Status Finish(
|
||||
std::shared_ptr<arrow::Array> list_data,
|
||||
std::shared_ptr<arrow::Array> tuple_data,
|
||||
std::shared_ptr<arrow::Array> dict_data,
|
||||
std::shared_ptr<arrow::Array>* out);
|
||||
|
||||
private:
|
||||
arrow::MemoryPool* pool_;
|
||||
|
||||
arrow::Int8Builder types_;
|
||||
arrow::Int32Builder offsets_;
|
||||
|
||||
arrow::NullArrayBuilder nones_;
|
||||
arrow::BooleanBuilder bools_;
|
||||
arrow::Int64Builder ints_;
|
||||
arrow::BinaryBuilder bytes_;
|
||||
arrow::StringBuilder strings_;
|
||||
arrow::FloatBuilder floats_;
|
||||
arrow::DoubleBuilder doubles_;
|
||||
|
||||
UInt8TensorBuilder uint8_tensors_;
|
||||
Int8TensorBuilder int8_tensors_;
|
||||
UInt16TensorBuilder uint16_tensors_;
|
||||
Int16TensorBuilder int16_tensors_;
|
||||
UInt32TensorBuilder uint32_tensors_;
|
||||
Int32TensorBuilder int32_tensors_;
|
||||
UInt64TensorBuilder uint64_tensors_;
|
||||
Int64TensorBuilder int64_tensors_;
|
||||
FloatTensorBuilder float_tensors_;
|
||||
DoubleTensorBuilder double_tensors_;
|
||||
|
||||
std::vector<int32_t> list_offsets_;
|
||||
std::vector<int32_t> tuple_offsets_;
|
||||
std::vector<int32_t> dict_offsets_;
|
||||
|
||||
int8_t bool_tag = -1;
|
||||
int8_t int_tag = -1;
|
||||
int8_t string_tag = -1;
|
||||
int8_t bytes_tag = -1;
|
||||
int8_t float_tag = -1;
|
||||
int8_t double_tag = -1;
|
||||
|
||||
int8_t uint8_tensor_tag = -1;
|
||||
int8_t int8_tensor_tag = -1;
|
||||
int8_t uint16_tensor_tag = -1;
|
||||
int8_t int16_tensor_tag = -1;
|
||||
int8_t uint32_tensor_tag = -1;
|
||||
int8_t int32_tensor_tag = -1;
|
||||
int8_t uint64_tensor_tag = -1;
|
||||
int8_t int64_tensor_tag = -1;
|
||||
int8_t float_tensor_tag = -1;
|
||||
int8_t double_tensor_tag = -1;
|
||||
|
||||
int8_t list_tag = -1;
|
||||
int8_t tuple_tag = -1;
|
||||
int8_t dict_tag = -1;
|
||||
|
||||
int8_t num_tags = 0;
|
||||
};
|
||||
|
||||
} // namespace numbuf
|
||||
|
||||
#endif // NUMBUF_LIST_H
|
||||
55
numbuf/cpp/src/numbuf/tensor.cc
Normal file
55
numbuf/cpp/src/numbuf/tensor.cc
Normal file
|
|
@ -0,0 +1,55 @@
|
|||
#include "tensor.h"
|
||||
|
||||
using namespace arrow;
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
template<typename T>
|
||||
TensorBuilder<T>::TensorBuilder(const TypePtr& dtype, MemoryPool* pool)
|
||||
: dtype_(dtype), pool_(pool) {}
|
||||
|
||||
template<typename T>
|
||||
Status TensorBuilder<T>::Start() {
|
||||
dim_data_ = std::make_shared<Int64Builder>(pool_, std::make_shared<Int64Type>());
|
||||
dims_ = std::make_shared<ListBuilder>(pool_, dim_data_);
|
||||
value_data_ = std::make_shared<PrimitiveBuilder<T>>(pool_, dtype_);
|
||||
values_ = std::make_shared<ListBuilder>(pool_, value_data_);
|
||||
auto dims_field = std::make_shared<Field>("dims", dims_->type());
|
||||
auto values_field = std::make_shared<Field>("data", values_->type());
|
||||
auto type = std::make_shared<StructType>(std::vector<FieldPtr>({dims_field, values_field}));
|
||||
tensors_ = std::make_shared<StructBuilder>(pool_, type, std::vector<std::shared_ptr<ArrayBuilder>>({dims_, values_}));
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
template<typename T>
|
||||
Status TensorBuilder<T>::Append(const std::vector<int64_t>& dims, const elem_type* data) {
|
||||
DCHECK(tensors_);
|
||||
RETURN_NOT_OK(tensors_->Append());
|
||||
RETURN_NOT_OK(dims_->Append());
|
||||
RETURN_NOT_OK(values_->Append());
|
||||
int32_t size = 1;
|
||||
for (auto dim : dims) {
|
||||
size *= dim;
|
||||
RETURN_NOT_OK(dim_data_->Append(dim));
|
||||
}
|
||||
RETURN_NOT_OK(value_data_->Append(data, size));
|
||||
return Status::OK(); // tensors_->Append();
|
||||
}
|
||||
|
||||
template<typename T>
|
||||
Status TensorBuilder<T>::Finish(std::shared_ptr<Array>* out) {
|
||||
return tensors_->Finish(out);
|
||||
}
|
||||
|
||||
template class TensorBuilder<UInt8Type>;
|
||||
template class TensorBuilder<Int8Type>;
|
||||
template class TensorBuilder<UInt16Type>;
|
||||
template class TensorBuilder<Int16Type>;
|
||||
template class TensorBuilder<UInt32Type>;
|
||||
template class TensorBuilder<Int32Type>;
|
||||
template class TensorBuilder<UInt64Type>;
|
||||
template class TensorBuilder<Int64Type>;
|
||||
template class TensorBuilder<FloatType>;
|
||||
template class TensorBuilder<DoubleType>;
|
||||
|
||||
}
|
||||
70
numbuf/cpp/src/numbuf/tensor.h
Normal file
70
numbuf/cpp/src/numbuf/tensor.h
Normal file
|
|
@ -0,0 +1,70 @@
|
|||
#ifndef NUMBUF_TENSOR_H
|
||||
#define NUMBUF_TENSOR_H
|
||||
|
||||
#include <memory>
|
||||
#include <arrow/type.h>
|
||||
#include <arrow/api.h>
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
/*! This is a class for building a dataframe where each row corresponds to
|
||||
a Tensor (= multidimensional array) of numerical data. There are two
|
||||
columns, "dims" which contains an array of dimensions for each Tensor
|
||||
and "data" which contains data buffer of the Tensor as a flattened array.
|
||||
*/
|
||||
template<typename T>
|
||||
class TensorBuilder {
|
||||
public:
|
||||
typedef typename T::c_type elem_type;
|
||||
|
||||
TensorBuilder(const arrow::TypePtr& dtype, arrow::MemoryPool* pool = nullptr);
|
||||
|
||||
arrow::Status Start();
|
||||
|
||||
/*! Append a new tensor.
|
||||
|
||||
\param dims
|
||||
The dimensions of the Tensor
|
||||
|
||||
\param data
|
||||
Pointer to the beginning of the data buffer of the Tensor. The
|
||||
total length of the buffer is sizeof(elem_type) * product of dims[i] over i
|
||||
*/
|
||||
arrow::Status Append(const std::vector<int64_t>& dims, const elem_type* data);
|
||||
|
||||
//! Convert the tensors to an Arrow StructArray
|
||||
arrow::Status Finish(std::shared_ptr<arrow::Array>* out);
|
||||
|
||||
//! Number of tensors in the column
|
||||
int32_t length() {
|
||||
return tensors_->length();
|
||||
}
|
||||
|
||||
const arrow::TypePtr& type() {
|
||||
return tensors_->type();
|
||||
}
|
||||
|
||||
private:
|
||||
arrow::TypePtr dtype_;
|
||||
arrow::MemoryPool* pool_;
|
||||
std::shared_ptr<arrow::Int64Builder> dim_data_;
|
||||
std::shared_ptr<arrow::ListBuilder> dims_;
|
||||
std::shared_ptr<arrow::PrimitiveBuilder<T>> value_data_;
|
||||
std::shared_ptr<arrow::ListBuilder> values_;
|
||||
std::shared_ptr<arrow::StructBuilder> tensors_;
|
||||
};
|
||||
|
||||
typedef TensorBuilder<arrow::UInt8Type> UInt8TensorBuilder;
|
||||
typedef TensorBuilder<arrow::Int8Type> Int8TensorBuilder;
|
||||
typedef TensorBuilder<arrow::UInt16Type> UInt16TensorBuilder;
|
||||
typedef TensorBuilder<arrow::Int16Type> Int16TensorBuilder;
|
||||
typedef TensorBuilder<arrow::UInt32Type> UInt32TensorBuilder;
|
||||
typedef TensorBuilder<arrow::Int32Type> Int32TensorBuilder;
|
||||
typedef TensorBuilder<arrow::UInt64Type> UInt64TensorBuilder;
|
||||
typedef TensorBuilder<arrow::Int64Type> Int64TensorBuilder;
|
||||
typedef TensorBuilder<arrow::FloatType> FloatTensorBuilder;
|
||||
typedef TensorBuilder<arrow::DoubleType> DoubleTensorBuilder;
|
||||
|
||||
}
|
||||
|
||||
#endif // NUMBUF_TENSOR_H
|
||||
36
numbuf/install-dependencies.sh
Executable file
36
numbuf/install-dependencies.sh
Executable file
|
|
@ -0,0 +1,36 @@
|
|||
#!/usr/bin/env bash
|
||||
|
||||
ROOT_DIR=$(cd "$(dirname "${BASH_SOURCE:-$0}")"; pwd)
|
||||
|
||||
platform="unknown"
|
||||
unamestr="$(uname)"
|
||||
if [[ "$unamestr" == "Linux" ]]; then
|
||||
echo "Platform is linux."
|
||||
platform="linux"
|
||||
elif [[ "$unamestr" == "Darwin" ]]; then
|
||||
echo "Platform is macosx."
|
||||
platform="macosx"
|
||||
else
|
||||
echo "Unrecognized platform."
|
||||
exit 1
|
||||
fi
|
||||
|
||||
if [[ $platform == "linux" ]]; then
|
||||
# These commands must be kept in sync with the installation instructions.
|
||||
sudo apt-get update
|
||||
sudo apt-get install -y cmake build-essential autoconf libtool python-dev python-numpy libboost-all-dev
|
||||
elif [[ $platform == "macosx" ]]; then
|
||||
# check that brew is installed
|
||||
which -s brew
|
||||
if [[ $? != 0 ]]; then
|
||||
echo "Could not find brew, please install brew (see http://brew.sh/)."
|
||||
exit 1
|
||||
else
|
||||
echo "Updating brew."
|
||||
brew update
|
||||
fi
|
||||
# These commands must be kept in sync with the installation instructions.
|
||||
brew install cmake automake autoconf libtool boost
|
||||
sudo easy_install pip
|
||||
sudo pip install numpy --ignore-installed six
|
||||
fi
|
||||
1
numbuf/numbuf/__init__.py
Normal file
1
numbuf/numbuf/__init__.py
Normal file
|
|
@ -0,0 +1 @@
|
|||
from libnumbuf import *
|
||||
132
numbuf/python/src/pynumbuf/adapters/numpy.cc
Normal file
132
numbuf/python/src/pynumbuf/adapters/numpy.cc
Normal file
|
|
@ -0,0 +1,132 @@
|
|||
#include "numpy.h"
|
||||
#include "python.h"
|
||||
|
||||
#include <sstream>
|
||||
|
||||
#include <numbuf/tensor.h>
|
||||
|
||||
using namespace arrow;
|
||||
|
||||
extern "C" {
|
||||
extern PyObject *numbuf_serialize_callback;
|
||||
extern PyObject *numbuf_deserialize_callback;
|
||||
}
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
#define ARROW_TYPE_TO_NUMPY_CASE(TYPE) \
|
||||
case Type::TYPE: \
|
||||
return NPY_##TYPE;
|
||||
|
||||
#define DESERIALIZE_ARRAY_CASE(TYPE, ArrayType, type) \
|
||||
case Type::TYPE: { \
|
||||
auto values = std::dynamic_pointer_cast<ArrayType>(content->values()); \
|
||||
DCHECK(values); \
|
||||
type* data = const_cast<type*>(values->raw_data()) \
|
||||
+ content->offset(offset); \
|
||||
*out = PyArray_SimpleNewFromData(num_dims, dim.data(), NPY_##TYPE, \
|
||||
reinterpret_cast<void*>(data)); \
|
||||
if (base != Py_None) { \
|
||||
PyArray_SetBaseObject((PyArrayObject*) *out, base); \
|
||||
} \
|
||||
Py_XINCREF(base); \
|
||||
} \
|
||||
return Status::OK();
|
||||
|
||||
Status DeserializeArray(std::shared_ptr<Array> array, int32_t offset, PyObject* base, PyObject** out) {
|
||||
DCHECK(array);
|
||||
auto tensor = std::dynamic_pointer_cast<StructArray>(array);
|
||||
DCHECK(tensor);
|
||||
auto dims = std::dynamic_pointer_cast<ListArray>(tensor->field(0));
|
||||
auto content = std::dynamic_pointer_cast<ListArray>(tensor->field(1));
|
||||
npy_intp num_dims = dims->value_length(offset);
|
||||
std::vector<npy_intp> dim(num_dims);
|
||||
for (int i = dims->offset(offset); i < dims->offset(offset+1); ++i) {
|
||||
dim[i - dims->offset(offset)] =
|
||||
std::dynamic_pointer_cast<Int64Array>(dims->values())->Value(i);
|
||||
}
|
||||
switch (content->value_type()->type) {
|
||||
DESERIALIZE_ARRAY_CASE(INT8, Int8Array, int8_t)
|
||||
DESERIALIZE_ARRAY_CASE(INT16, Int16Array, int16_t)
|
||||
DESERIALIZE_ARRAY_CASE(INT32, Int32Array, int32_t)
|
||||
DESERIALIZE_ARRAY_CASE(INT64, Int64Array, int64_t)
|
||||
DESERIALIZE_ARRAY_CASE(UINT8, UInt8Array, uint8_t)
|
||||
DESERIALIZE_ARRAY_CASE(UINT16, UInt16Array, uint16_t)
|
||||
DESERIALIZE_ARRAY_CASE(UINT32, UInt32Array, uint32_t)
|
||||
DESERIALIZE_ARRAY_CASE(UINT64, UInt64Array, uint64_t)
|
||||
DESERIALIZE_ARRAY_CASE(FLOAT, FloatArray, float)
|
||||
DESERIALIZE_ARRAY_CASE(DOUBLE, DoubleArray, double)
|
||||
default:
|
||||
DCHECK(false) << "arrow type not recognized: " << content->value_type()->type;
|
||||
}
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
Status SerializeArray(PyArrayObject* array, SequenceBuilder& builder,
|
||||
std::vector<PyObject*>& subdicts) {
|
||||
size_t ndim = PyArray_NDIM(array);
|
||||
int dtype = PyArray_TYPE(array);
|
||||
std::vector<int64_t> dims(ndim);
|
||||
for (int i = 0; i < ndim; ++i) {
|
||||
dims[i] = PyArray_DIM(array, i);
|
||||
}
|
||||
// TODO(pcm): Once we don't use builders any more below and directly share
|
||||
// the memory buffer, we need to be more careful about this and not
|
||||
// decrease the reference count of "contiguous" before the serialization
|
||||
// is finished
|
||||
auto contiguous = PyArray_GETCONTIGUOUS(array);
|
||||
auto data = PyArray_DATA(contiguous);
|
||||
switch (dtype) {
|
||||
case NPY_UINT8:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<uint8_t*>(data)));
|
||||
break;
|
||||
case NPY_INT8:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<int8_t*>(data)));
|
||||
break;
|
||||
case NPY_UINT16:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<uint16_t*>(data)));
|
||||
break;
|
||||
case NPY_INT16:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<int16_t*>(data)));
|
||||
break;
|
||||
case NPY_UINT32:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<uint32_t*>(data)));
|
||||
break;
|
||||
case NPY_INT32:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<int32_t*>(data)));
|
||||
break;
|
||||
case NPY_UINT64:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<uint64_t*>(data)));
|
||||
break;
|
||||
case NPY_INT64:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<int64_t*>(data)));
|
||||
break;
|
||||
case NPY_FLOAT:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<float*>(data)));
|
||||
break;
|
||||
case NPY_DOUBLE:
|
||||
RETURN_NOT_OK(builder.AppendTensor(dims, reinterpret_cast<double*>(data)));
|
||||
break;
|
||||
default:
|
||||
if (!numbuf_serialize_callback) {
|
||||
std::stringstream stream;
|
||||
stream << "numpy data type not recognized: " << dtype;
|
||||
return Status::NotImplemented(stream.str());
|
||||
} else {
|
||||
PyObject* arglist = Py_BuildValue("(O)", array);
|
||||
// The reference count of the result of the call to PyObject_CallObject
|
||||
// must be decremented. This is done in SerializeDict in python.cc.
|
||||
PyObject* result = PyObject_CallObject(numbuf_serialize_callback, arglist);
|
||||
Py_XDECREF(arglist);
|
||||
if (!result) {
|
||||
return Status::NotImplemented("python error"); // TODO(pcm): https://github.com/ray-project/numbuf/issues/10
|
||||
}
|
||||
builder.AppendDict(PyDict_Size(result));
|
||||
subdicts.push_back(result);
|
||||
}
|
||||
}
|
||||
Py_XDECREF(contiguous);
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
}
|
||||
22
numbuf/python/src/pynumbuf/adapters/numpy.h
Normal file
22
numbuf/python/src/pynumbuf/adapters/numpy.h
Normal file
|
|
@ -0,0 +1,22 @@
|
|||
#ifndef PYNUMBUF_NUMPY_H
|
||||
#define PYNUMBUF_NUMPY_H
|
||||
|
||||
#include <arrow/api.h>
|
||||
#include <Python.h>
|
||||
|
||||
#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
|
||||
#define NO_IMPORT_ARRAY
|
||||
#define PY_ARRAY_UNIQUE_SYMBOL NUMBUF_ARRAY_API
|
||||
#include <numpy/arrayobject.h>
|
||||
|
||||
#include <numbuf/tensor.h>
|
||||
#include <numbuf/sequence.h>
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
arrow::Status SerializeArray(PyArrayObject* array, SequenceBuilder& builder, std::vector<PyObject*>& subdicts);
|
||||
arrow::Status DeserializeArray(std::shared_ptr<arrow::Array> array, int32_t offset, PyObject* base, PyObject** out);
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
281
numbuf/python/src/pynumbuf/adapters/python.cc
Normal file
281
numbuf/python/src/pynumbuf/adapters/python.cc
Normal file
|
|
@ -0,0 +1,281 @@
|
|||
#include "python.h"
|
||||
|
||||
#include <sstream>
|
||||
|
||||
#include "scalars.h"
|
||||
|
||||
using namespace arrow;
|
||||
|
||||
int32_t MAX_RECURSION_DEPTH = 100;
|
||||
|
||||
extern "C" {
|
||||
|
||||
extern PyObject* numbuf_serialize_callback;
|
||||
extern PyObject* numbuf_deserialize_callback;
|
||||
|
||||
}
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
Status get_value(ArrayPtr arr, int32_t index, int32_t type, PyObject* base, PyObject** result) {
|
||||
switch (arr->type()->type) {
|
||||
case Type::BOOL:
|
||||
*result = PyBool_FromLong(std::static_pointer_cast<BooleanArray>(arr)->Value(index));
|
||||
return Status::OK();
|
||||
case Type::INT64:
|
||||
*result = PyInt_FromLong(std::static_pointer_cast<Int64Array>(arr)->Value(index));
|
||||
return Status::OK();
|
||||
case Type::BINARY: {
|
||||
int32_t nchars;
|
||||
const uint8_t* str = std::static_pointer_cast<BinaryArray>(arr)->GetValue(index, &nchars);
|
||||
*result = PyString_FromStringAndSize(reinterpret_cast<const char*>(str), nchars);
|
||||
return Status::OK();
|
||||
}
|
||||
case Type::STRING: {
|
||||
int32_t nchars;
|
||||
const uint8_t* str = std::static_pointer_cast<StringArray>(arr)->GetValue(index, &nchars);
|
||||
*result = PyUnicode_FromStringAndSize(reinterpret_cast<const char*>(str), nchars);
|
||||
return Status::OK();
|
||||
}
|
||||
case Type::FLOAT:
|
||||
*result = PyFloat_FromDouble(std::static_pointer_cast<FloatArray>(arr)->Value(index));
|
||||
return Status::OK();
|
||||
case Type::DOUBLE:
|
||||
*result = PyFloat_FromDouble(std::static_pointer_cast<DoubleArray>(arr)->Value(index));
|
||||
return Status::OK();
|
||||
case Type::STRUCT: {
|
||||
auto s = std::static_pointer_cast<StructArray>(arr);
|
||||
auto l = std::static_pointer_cast<ListArray>(s->field(0));
|
||||
if (s->type()->child(0)->name == "list") {
|
||||
return DeserializeList(l->values(), l->value_offset(index), l->value_offset(index+1), base, result);
|
||||
} else if (s->type()->child(0)->name == "tuple") {
|
||||
return DeserializeTuple(l->values(), l->value_offset(index), l->value_offset(index+1), base, result);
|
||||
} else if (s->type()->child(0)->name == "dict") {
|
||||
return DeserializeDict(l->values(), l->value_offset(index), l->value_offset(index+1), base, result);
|
||||
} else {
|
||||
return DeserializeArray(arr, index, base, result);
|
||||
}
|
||||
}
|
||||
default:
|
||||
DCHECK(false) << "union tag not recognized " << type;
|
||||
}
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
Status append(PyObject* elem, SequenceBuilder& builder,
|
||||
std::vector<PyObject*>& sublists,
|
||||
std::vector<PyObject*>& subtuples,
|
||||
std::vector<PyObject*>& subdicts) {
|
||||
// The bool case must precede the int case (PyInt_Check passes for bools)
|
||||
if (PyBool_Check(elem)) {
|
||||
RETURN_NOT_OK(builder.AppendBool(elem == Py_True));
|
||||
} else if (PyFloat_Check(elem)) {
|
||||
RETURN_NOT_OK(builder.AppendDouble(PyFloat_AS_DOUBLE(elem)));
|
||||
} else if (PyLong_Check(elem)) {
|
||||
int overflow = 0;
|
||||
int64_t data = PyLong_AsLongLongAndOverflow(elem, &overflow);
|
||||
RETURN_NOT_OK(builder.AppendInt64(data));
|
||||
if(overflow) {
|
||||
return Status::NotImplemented("long overflow");
|
||||
}
|
||||
} else if (PyInt_Check(elem)) {
|
||||
RETURN_NOT_OK(builder.AppendInt64(static_cast<int64_t>(PyInt_AS_LONG(elem))));
|
||||
} else if (PyString_Check(elem)) {
|
||||
auto data = reinterpret_cast<uint8_t*>(PyString_AS_STRING(elem));
|
||||
auto size = PyString_GET_SIZE(elem);
|
||||
RETURN_NOT_OK(builder.AppendBytes(data, size));
|
||||
} else if (PyUnicode_Check(elem)) {
|
||||
Py_ssize_t size;
|
||||
#if PY_MAJOR_VERSION >= 3
|
||||
char* data = PyUnicode_AsUTF8AndSize(elem, &size); // TODO(pcm): Check if this is correct
|
||||
#else
|
||||
PyObject* str = PyUnicode_AsUTF8String(elem);
|
||||
char* data = PyString_AS_STRING(str);
|
||||
size = PyString_GET_SIZE(str);
|
||||
#endif
|
||||
Status s = builder.AppendString(data, size);
|
||||
Py_XDECREF(str);
|
||||
RETURN_NOT_OK(s);
|
||||
} else if (PyList_Check(elem)) {
|
||||
builder.AppendList(PyList_Size(elem));
|
||||
sublists.push_back(elem);
|
||||
} else if (PyDict_Check(elem)) {
|
||||
builder.AppendDict(PyDict_Size(elem));
|
||||
subdicts.push_back(elem);
|
||||
} else if (PyTuple_CheckExact(elem)) {
|
||||
builder.AppendTuple(PyTuple_Size(elem));
|
||||
subtuples.push_back(elem);
|
||||
} else if (PyArray_IsScalar(elem, Generic)) {
|
||||
RETURN_NOT_OK(AppendScalar(elem, builder));
|
||||
} else if (PyArray_Check(elem)) {
|
||||
RETURN_NOT_OK(SerializeArray((PyArrayObject*) elem, builder, subdicts));
|
||||
} else if (elem == Py_None) {
|
||||
RETURN_NOT_OK(builder.AppendNone());
|
||||
} else {
|
||||
if (!numbuf_serialize_callback) {
|
||||
std::stringstream ss;
|
||||
ss << "data type of " << PyString_AS_STRING(PyObject_Repr(elem))
|
||||
<< " not recognized and custom serialization handler not registered";
|
||||
return Status::NotImplemented(ss.str());
|
||||
} else {
|
||||
PyObject* arglist = Py_BuildValue("(O)", elem);
|
||||
// The reference count of the result of the call to PyObject_CallObject
|
||||
// must be decremented. This is done in SerializeDict in this file.
|
||||
PyObject* result = PyObject_CallObject(numbuf_serialize_callback, arglist);
|
||||
Py_XDECREF(arglist);
|
||||
if (!result) {
|
||||
return Status::NotImplemented("python error"); // TODO(pcm): https://github.com/ray-project/numbuf/issues/10
|
||||
}
|
||||
builder.AppendDict(PyDict_Size(result));
|
||||
subdicts.push_back(result);
|
||||
}
|
||||
}
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
Status SerializeSequences(std::vector<PyObject*> sequences, int32_t recursion_depth, std::shared_ptr<Array>* out) {
|
||||
DCHECK(out);
|
||||
if (recursion_depth >= MAX_RECURSION_DEPTH) {
|
||||
return Status::NotImplemented("This object exceeds the maximum recursion depth. It may contain itself recursively.");
|
||||
}
|
||||
SequenceBuilder builder(nullptr);
|
||||
std::vector<PyObject*> sublists, subtuples, subdicts;
|
||||
for (const auto& sequence : sequences) {
|
||||
PyObject* item;
|
||||
PyObject* iterator = PyObject_GetIter(sequence);
|
||||
while ((item = PyIter_Next(iterator))) {
|
||||
Status s = append(item, builder, sublists, subtuples, subdicts);
|
||||
Py_DECREF(item);
|
||||
// if an error occurs, we need to decrement the reference counts before returning
|
||||
if (!s.ok()) {
|
||||
Py_DECREF(iterator);
|
||||
return s;
|
||||
}
|
||||
}
|
||||
Py_DECREF(iterator);
|
||||
}
|
||||
std::shared_ptr<Array> list;
|
||||
if (sublists.size() > 0) {
|
||||
RETURN_NOT_OK(SerializeSequences(sublists, recursion_depth + 1, &list));
|
||||
}
|
||||
std::shared_ptr<Array> tuple;
|
||||
if (subtuples.size() > 0) {
|
||||
RETURN_NOT_OK(SerializeSequences(subtuples, recursion_depth + 1, &tuple));
|
||||
}
|
||||
std::shared_ptr<Array> dict;
|
||||
if (subdicts.size() > 0) {
|
||||
RETURN_NOT_OK(SerializeDict(subdicts, recursion_depth + 1, &dict));
|
||||
}
|
||||
return builder.Finish(list, tuple, dict, out);
|
||||
}
|
||||
|
||||
#define DESERIALIZE_SEQUENCE(CREATE, SET_ITEM) \
|
||||
auto data = std::dynamic_pointer_cast<UnionArray>(array); \
|
||||
int32_t size = array->length(); \
|
||||
PyObject* result = CREATE(stop_idx - start_idx); \
|
||||
auto types = std::make_shared<Int8Array>(size, data->types()); \
|
||||
auto offsets = std::make_shared<Int32Array>(size, data->offset_buf()); \
|
||||
for (size_t i = start_idx; i < stop_idx; ++i) { \
|
||||
if (data->IsNull(i)) { \
|
||||
Py_INCREF(Py_None); \
|
||||
SET_ITEM(result, i-start_idx, Py_None); \
|
||||
} else { \
|
||||
int32_t offset = offsets->Value(i); \
|
||||
int8_t type = types->Value(i); \
|
||||
ArrayPtr arr = data->child(type); \
|
||||
PyObject* value; \
|
||||
RETURN_NOT_OK(get_value(arr, offset, type, base, &value)); \
|
||||
SET_ITEM(result, i-start_idx, value); \
|
||||
} \
|
||||
} \
|
||||
*out = result; \
|
||||
return Status::OK();
|
||||
|
||||
Status DeserializeList(std::shared_ptr<Array> array, int32_t start_idx, int32_t stop_idx, PyObject* base, PyObject** out) {
|
||||
DESERIALIZE_SEQUENCE(PyList_New, PyList_SetItem)
|
||||
}
|
||||
|
||||
Status DeserializeTuple(std::shared_ptr<Array> array, int32_t start_idx, int32_t stop_idx, PyObject* base, PyObject** out) {
|
||||
DESERIALIZE_SEQUENCE(PyTuple_New, PyTuple_SetItem)
|
||||
}
|
||||
|
||||
Status SerializeDict(std::vector<PyObject*> dicts, int32_t recursion_depth, std::shared_ptr<Array>* out) {
|
||||
DictBuilder result;
|
||||
if (recursion_depth >= MAX_RECURSION_DEPTH) {
|
||||
return Status::NotImplemented("This object exceeds the maximum recursion depth. It may contain itself recursively.");
|
||||
}
|
||||
std::vector<PyObject*> key_tuples, val_lists, val_tuples, val_dicts, dummy;
|
||||
for (const auto& dict : dicts) {
|
||||
PyObject *key, *value;
|
||||
Py_ssize_t pos = 0;
|
||||
while (PyDict_Next(dict, &pos, &key, &value)) {
|
||||
RETURN_NOT_OK(append(key, result.keys(), dummy, key_tuples, dummy));
|
||||
DCHECK(dummy.size() == 0);
|
||||
RETURN_NOT_OK(append(value, result.vals(), val_lists, val_tuples, val_dicts));
|
||||
}
|
||||
}
|
||||
std::shared_ptr<Array> key_tuples_arr;
|
||||
if (key_tuples.size() > 0) {
|
||||
RETURN_NOT_OK(SerializeSequences(key_tuples, recursion_depth + 1, &key_tuples_arr));
|
||||
}
|
||||
std::shared_ptr<Array> val_list_arr;
|
||||
if (val_lists.size() > 0) {
|
||||
RETURN_NOT_OK(SerializeSequences(val_lists, recursion_depth + 1, &val_list_arr));
|
||||
}
|
||||
std::shared_ptr<Array> val_tuples_arr;
|
||||
if (val_tuples.size() > 0) {
|
||||
RETURN_NOT_OK(SerializeSequences(val_tuples, recursion_depth + 1, &val_tuples_arr));
|
||||
}
|
||||
std::shared_ptr<Array> val_dict_arr;
|
||||
if (val_dicts.size() > 0) {
|
||||
RETURN_NOT_OK(SerializeDict(val_dicts, recursion_depth + 1, &val_dict_arr));
|
||||
}
|
||||
result.Finish(key_tuples_arr, val_list_arr, val_tuples_arr, val_dict_arr, out);
|
||||
|
||||
// This block is used to decrement the reference counts of the results
|
||||
// returned by the serialization callback, which is called in SerializeArray
|
||||
// in numpy.cc as well as in DeserializeDict and in append in this file.
|
||||
static PyObject* py_type = PyString_FromString("_pytype_");
|
||||
for (const auto& dict : dicts) {
|
||||
if (PyDict_Contains(dict, py_type)) {
|
||||
// If the dictionary contains the key "_pytype_", then the user has to
|
||||
// have registered a callback.
|
||||
ARROW_CHECK(numbuf_serialize_callback);
|
||||
Py_XDECREF(dict);
|
||||
}
|
||||
}
|
||||
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
Status DeserializeDict(std::shared_ptr<Array> array, int32_t start_idx, int32_t stop_idx, PyObject* base, PyObject** out) {
|
||||
auto data = std::dynamic_pointer_cast<StructArray>(array);
|
||||
// TODO(pcm): error handling, get rid of the temporary copy of the list
|
||||
PyObject *keys, *vals;
|
||||
PyObject* result = PyDict_New();
|
||||
ARROW_RETURN_NOT_OK(DeserializeList(data->field(0), start_idx, stop_idx, base, &keys));
|
||||
ARROW_RETURN_NOT_OK(DeserializeList(data->field(1), start_idx, stop_idx, base, &vals));
|
||||
for (size_t i = start_idx; i < stop_idx; ++i) {
|
||||
PyDict_SetItem(result, PyList_GetItem(keys, i - start_idx), PyList_GetItem(vals, i - start_idx));
|
||||
}
|
||||
Py_XDECREF(keys); // PyList_GetItem(keys, ...) incremented the reference count
|
||||
Py_XDECREF(vals); // PyList_GetItem(vals, ...) incremented the reference count
|
||||
static PyObject* py_type = PyString_FromString("_pytype_");
|
||||
if (PyDict_Contains(result, py_type) && numbuf_deserialize_callback) {
|
||||
PyObject* arglist = Py_BuildValue("(O)", result);
|
||||
// The result of the call to PyObject_CallObject will be passed to Python
|
||||
// and its reference count will be decremented by the interpreter.
|
||||
PyObject* callback_result = PyObject_CallObject(numbuf_deserialize_callback, arglist);
|
||||
Py_XDECREF(arglist);
|
||||
Py_XDECREF(result);
|
||||
result = callback_result;
|
||||
if (!callback_result) {
|
||||
return Status::NotImplemented("python error"); // TODO(pcm): https://github.com/ray-project/numbuf/issues/10
|
||||
}
|
||||
}
|
||||
*out = result;
|
||||
return Status::OK();
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
22
numbuf/python/src/pynumbuf/adapters/python.h
Normal file
22
numbuf/python/src/pynumbuf/adapters/python.h
Normal file
|
|
@ -0,0 +1,22 @@
|
|||
#ifndef PYNUMBUF_PYTHON_H
|
||||
#define PYNUMBUF_PYTHON_H
|
||||
|
||||
#include <Python.h>
|
||||
|
||||
#include <arrow/api.h>
|
||||
#include <numbuf/dict.h>
|
||||
#include <numbuf/sequence.h>
|
||||
|
||||
#include "numpy.h"
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
arrow::Status SerializeSequences(std::vector<PyObject*> sequences, int32_t recursion_depth, std::shared_ptr<arrow::Array>* out);
|
||||
arrow::Status SerializeDict(std::vector<PyObject*> dicts, int32_t recursion_depth, std::shared_ptr<arrow::Array>* out);
|
||||
arrow::Status DeserializeList(std::shared_ptr<arrow::Array> array, int32_t start_idx, int32_t stop_idx, PyObject* base, PyObject** out);
|
||||
arrow::Status DeserializeTuple(std::shared_ptr<arrow::Array> array, int32_t start_idx, int32_t stop_idx, PyObject* base, PyObject** out);
|
||||
arrow::Status DeserializeDict(std::shared_ptr<arrow::Array> array, int32_t start_idx, int32_t stop_idx, PyObject* base, PyObject** out);
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
54
numbuf/python/src/pynumbuf/adapters/scalars.h
Normal file
54
numbuf/python/src/pynumbuf/adapters/scalars.h
Normal file
|
|
@ -0,0 +1,54 @@
|
|||
#ifndef PYNUMBUF_SCALARS_H
|
||||
#define PYNUMBUF_SCALARS_H
|
||||
|
||||
#include <arrow/api.h>
|
||||
|
||||
#include <Python.h>
|
||||
#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
|
||||
#define NO_IMPORT_ARRAY
|
||||
#define PY_ARRAY_UNIQUE_SYMBOL NUMBUF_ARRAY_API
|
||||
#include <numpy/arrayobject.h>
|
||||
#include <numpy/arrayscalars.h>
|
||||
|
||||
#include <numbuf/sequence.h>
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
arrow::Status AppendScalar(PyObject* obj, SequenceBuilder& builder) {
|
||||
if (PyArray_IsScalar(obj, Bool)) {
|
||||
return builder.AppendBool(((PyBoolScalarObject *)obj)->obval != 0);
|
||||
} else if (PyArray_IsScalar(obj, Float)) {
|
||||
return builder.AppendFloat(((PyFloatScalarObject *)obj)->obval);
|
||||
} else if (PyArray_IsScalar(obj, Double)) {
|
||||
return builder.AppendDouble(((PyDoubleScalarObject *)obj)->obval);
|
||||
}
|
||||
int64_t value = 0;
|
||||
if (PyArray_IsScalar(obj, Byte)) {
|
||||
value = ((PyByteScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, UByte)) {
|
||||
value = ((PyUByteScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, Short)) {
|
||||
value = ((PyShortScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, UShort)) {
|
||||
value = ((PyUShortScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, Int)) {
|
||||
value = ((PyIntScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, UInt)) {
|
||||
value = ((PyUIntScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, Long)) {
|
||||
value = ((PyLongScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, ULong)) {
|
||||
value = ((PyULongScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, LongLong)) {
|
||||
value = ((PyLongLongScalarObject *)obj)->obval;
|
||||
} else if (PyArray_IsScalar(obj, ULongLong)) {
|
||||
value = ((PyULongLongScalarObject *)obj)->obval;
|
||||
} else {
|
||||
DCHECK(false) << "scalar type not recognized";
|
||||
}
|
||||
return builder.AppendInt64(value);
|
||||
}
|
||||
|
||||
} // namespace
|
||||
|
||||
#endif // PYNUMBUF_SCALARS_H
|
||||
68
numbuf/python/src/pynumbuf/memory.h
Normal file
68
numbuf/python/src/pynumbuf/memory.h
Normal file
|
|
@ -0,0 +1,68 @@
|
|||
#ifndef PYNUMBUF_MEMORY_H
|
||||
#define PYNUMBUF_MEMORY_H
|
||||
|
||||
#include <arrow/io/interfaces.h>
|
||||
|
||||
namespace numbuf {
|
||||
|
||||
class FixedBufferStream : public arrow::io::OutputStream, public arrow::io::ReadableFileInterface {
|
||||
public:
|
||||
virtual ~FixedBufferStream() {}
|
||||
|
||||
explicit FixedBufferStream(uint8_t* data, int64_t nbytes)
|
||||
: data_(data), position_(0), size_(nbytes) {}
|
||||
|
||||
arrow::Status Read(int64_t nbytes, std::shared_ptr<arrow::Buffer>* out) override {
|
||||
DCHECK(out);
|
||||
DCHECK(position_ + nbytes <= size_) << "position: " << position_ << " nbytes: " << nbytes << "size: " << size_;
|
||||
*out = std::make_shared<arrow::Buffer>(data_ + position_, nbytes);
|
||||
position_ += nbytes;
|
||||
return arrow::Status::OK();
|
||||
}
|
||||
|
||||
arrow::Status Read(int64_t nbytes, int64_t* bytes_read, uint8_t* out) {
|
||||
assert(0);
|
||||
return arrow::Status::OK();
|
||||
}
|
||||
|
||||
arrow::Status Seek(int64_t position) override {
|
||||
position_ = position;
|
||||
return arrow::Status::OK();
|
||||
}
|
||||
|
||||
arrow::Status Close() override {
|
||||
return arrow::Status::OK();
|
||||
}
|
||||
|
||||
arrow::Status Tell(int64_t* position) override {
|
||||
*position = position_;
|
||||
return arrow::Status::OK();
|
||||
}
|
||||
|
||||
arrow::Status Write(const uint8_t* data, int64_t nbytes) override {
|
||||
DCHECK(position_ >= 0 && position_ < size_);
|
||||
DCHECK(position_ + nbytes <= size_) << "position: " << position_ << " nbytes: " << nbytes << "size: " << size_;
|
||||
uint8_t* dst = data_ + position_;
|
||||
memcpy(dst, data, nbytes);
|
||||
position_ += nbytes;
|
||||
return arrow::Status::OK();
|
||||
}
|
||||
|
||||
arrow::Status GetSize(int64_t *size) override {
|
||||
*size = size_;
|
||||
return arrow::Status::OK();
|
||||
}
|
||||
|
||||
bool supports_zero_copy() const override {
|
||||
return true;
|
||||
}
|
||||
|
||||
private:
|
||||
uint8_t* data_;
|
||||
int64_t position_;
|
||||
int64_t size_;
|
||||
};
|
||||
|
||||
} // namespace numbuf
|
||||
|
||||
#endif // PYNUMBUF_MEMORY_H
|
||||
195
numbuf/python/src/pynumbuf/numbuf.cc
Normal file
195
numbuf/python/src/pynumbuf/numbuf.cc
Normal file
|
|
@ -0,0 +1,195 @@
|
|||
#include <Python.h>
|
||||
#include <arrow/api.h>
|
||||
#include <arrow/ipc/adapter.h>
|
||||
#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
|
||||
#define PY_ARRAY_UNIQUE_SYMBOL NUMBUF_ARRAY_API
|
||||
#include <numpy/arrayobject.h>
|
||||
|
||||
#include <iostream>
|
||||
|
||||
#include <arrow/ipc/metadata.h>
|
||||
|
||||
#include "adapters/python.h"
|
||||
#include "memory.h"
|
||||
|
||||
using namespace arrow;
|
||||
using namespace numbuf;
|
||||
|
||||
std::shared_ptr<RecordBatch> make_row_batch(std::shared_ptr<Array> data) {
|
||||
auto field = std::make_shared<Field>("list", data->type());
|
||||
std::shared_ptr<Schema> schema(new Schema({field}));
|
||||
return std::shared_ptr<RecordBatch>(new RecordBatch(schema, data->length(), {data}));
|
||||
}
|
||||
|
||||
extern "C" {
|
||||
|
||||
static PyObject *NumbufError;
|
||||
|
||||
PyObject *numbuf_serialize_callback = NULL;
|
||||
PyObject *numbuf_deserialize_callback = NULL;
|
||||
|
||||
int PyObjectToArrow(PyObject* object, std::shared_ptr<RecordBatch> **result) {
|
||||
if (PyCapsule_IsValid(object, "arrow")) {
|
||||
*result = reinterpret_cast<std::shared_ptr<RecordBatch>*>(PyCapsule_GetPointer(object, "arrow"));
|
||||
return 1;
|
||||
} else {
|
||||
PyErr_SetString(PyExc_TypeError, "must be an 'arrow' capsule");
|
||||
return 0;
|
||||
}
|
||||
}
|
||||
|
||||
static void ArrowCapsule_Destructor(PyObject* capsule) {
|
||||
delete reinterpret_cast<std::shared_ptr<RecordBatch>*>(PyCapsule_GetPointer(capsule, "arrow"));
|
||||
}
|
||||
|
||||
/* Documented in doc/numbuf.rst in ray-core */
|
||||
static PyObject* serialize_list(PyObject* self, PyObject* args) {
|
||||
PyObject* value;
|
||||
if (!PyArg_ParseTuple(args, "O", &value)) {
|
||||
return NULL;
|
||||
}
|
||||
std::shared_ptr<Array> array;
|
||||
if (PyList_Check(value)) {
|
||||
int32_t recursion_depth = 0;
|
||||
Status s = SerializeSequences(std::vector<PyObject*>({value}), recursion_depth, &array);
|
||||
if (!s.ok()) {
|
||||
// If this condition is true, there was an error in the callback that
|
||||
// needs to be passed through
|
||||
if (!PyErr_Occurred()) {
|
||||
PyErr_SetString(NumbufError, s.ToString().c_str());
|
||||
}
|
||||
return NULL;
|
||||
}
|
||||
|
||||
auto batch = new std::shared_ptr<RecordBatch>();
|
||||
*batch = make_row_batch(array);
|
||||
|
||||
int64_t size = 0;
|
||||
ARROW_CHECK_OK(arrow::ipc::GetRecordBatchSize(batch->get(), &size));
|
||||
|
||||
std::shared_ptr<Buffer> buffer;
|
||||
ARROW_CHECK_OK(ipc::WriteSchema((*batch)->schema().get(), &buffer));
|
||||
auto ptr = reinterpret_cast<const char*>(buffer->data());
|
||||
|
||||
PyObject* r = PyTuple_New(3);
|
||||
PyTuple_SetItem(r, 0, PyByteArray_FromStringAndSize(ptr, buffer->size()));
|
||||
PyTuple_SetItem(r, 1, PyInt_FromLong(size));
|
||||
PyTuple_SetItem(r, 2, PyCapsule_New(reinterpret_cast<void*>(batch),
|
||||
"arrow", &ArrowCapsule_Destructor));
|
||||
return r;
|
||||
}
|
||||
return NULL;
|
||||
}
|
||||
|
||||
/* Documented in doc/numbuf.rst in ray-core */
|
||||
static PyObject* write_to_buffer(PyObject* self, PyObject* args) {
|
||||
std::shared_ptr<RecordBatch>* batch;
|
||||
PyObject* memoryview;
|
||||
if (!PyArg_ParseTuple(args, "O&O", &PyObjectToArrow, &batch, &memoryview)) {
|
||||
return NULL;
|
||||
}
|
||||
if (!PyMemoryView_Check(memoryview)) {
|
||||
return NULL;
|
||||
}
|
||||
Py_buffer* buffer = PyMemoryView_GET_BUFFER(memoryview);
|
||||
auto target = std::make_shared<FixedBufferStream>(reinterpret_cast<uint8_t*>(buffer->buf), buffer->len);
|
||||
int64_t body_end_offset;
|
||||
int64_t header_end_offset;
|
||||
ARROW_CHECK_OK(ipc::WriteRecordBatch((*batch)->columns(), (*batch)->num_rows(), target.get(), &body_end_offset, &header_end_offset));
|
||||
return PyInt_FromLong(header_end_offset);
|
||||
}
|
||||
|
||||
/* Documented in doc/numbuf.rst in ray-core */
|
||||
static PyObject* read_from_buffer(PyObject* self, PyObject* args) {
|
||||
PyObject* memoryview;
|
||||
PyObject* metadata;
|
||||
int64_t metadata_offset;
|
||||
if (!PyArg_ParseTuple(args, "OOL", &memoryview, &metadata, &metadata_offset)) {
|
||||
return NULL;
|
||||
}
|
||||
|
||||
auto ptr = reinterpret_cast<uint8_t*>(PyByteArray_AsString(metadata));
|
||||
auto schema_buffer = std::make_shared<Buffer>(ptr, PyByteArray_Size(metadata));
|
||||
std::shared_ptr<ipc::Message> message;
|
||||
ARROW_CHECK_OK(ipc::Message::Open(schema_buffer, &message));
|
||||
DCHECK_EQ(ipc::Message::SCHEMA, message->type());
|
||||
std::shared_ptr<ipc::SchemaMessage> schema_msg = message->GetSchema();
|
||||
std::shared_ptr<Schema> schema;
|
||||
ARROW_CHECK_OK(schema_msg->GetSchema(&schema));
|
||||
|
||||
Py_buffer* buffer = PyMemoryView_GET_BUFFER(memoryview);
|
||||
auto source = std::make_shared<FixedBufferStream>(reinterpret_cast<uint8_t*>(buffer->buf), buffer->len);
|
||||
std::shared_ptr<arrow::ipc::RecordBatchReader> reader;
|
||||
ARROW_CHECK_OK(arrow::ipc::RecordBatchReader::Open(source.get(), metadata_offset, &reader));
|
||||
auto batch = new std::shared_ptr<arrow::RecordBatch>();
|
||||
ARROW_CHECK_OK(reader->GetRecordBatch(schema, batch));
|
||||
|
||||
return PyCapsule_New(reinterpret_cast<void*>(batch),
|
||||
"arrow", &ArrowCapsule_Destructor);
|
||||
}
|
||||
|
||||
/* Documented in doc/numbuf.rst in ray-core */
|
||||
static PyObject* deserialize_list(PyObject* self, PyObject* args) {
|
||||
std::shared_ptr<RecordBatch>* data;
|
||||
PyObject* base = Py_None;
|
||||
if (!PyArg_ParseTuple(args, "O&|O", &PyObjectToArrow, &data, &base)) {
|
||||
return NULL;
|
||||
}
|
||||
PyObject* result;
|
||||
Status s = DeserializeList((*data)->column(0), 0, (*data)->num_rows(), base, &result);
|
||||
if (!s.ok()) {
|
||||
// If this condition is true, there was an error in the callback that
|
||||
// needs to be passed through
|
||||
if (!PyErr_Occurred()) {
|
||||
PyErr_SetString(NumbufError, s.ToString().c_str());
|
||||
}
|
||||
return NULL;
|
||||
}
|
||||
return result;
|
||||
}
|
||||
|
||||
static PyObject* register_callbacks(PyObject* self, PyObject* args) {
|
||||
PyObject* result = NULL;
|
||||
PyObject* serialize_callback;
|
||||
PyObject* deserialize_callback;
|
||||
if (PyArg_ParseTuple(args, "OO:register_callbacks", &serialize_callback, &deserialize_callback)) {
|
||||
if (!PyCallable_Check(serialize_callback)) {
|
||||
PyErr_SetString(PyExc_TypeError, "serialize_callback must be callable");
|
||||
return NULL;
|
||||
}
|
||||
if (!PyCallable_Check(deserialize_callback)) {
|
||||
PyErr_SetString(PyExc_TypeError, "deserialize_callback must be callable");
|
||||
return NULL;
|
||||
}
|
||||
Py_XINCREF(serialize_callback); // Add a reference to new serialization callback
|
||||
Py_XINCREF(deserialize_callback); // Add a reference to new deserialization callback
|
||||
Py_XDECREF(numbuf_serialize_callback); // Dispose of old serialization callback
|
||||
Py_XDECREF(numbuf_deserialize_callback); // Dispose of old deserialization callback
|
||||
numbuf_serialize_callback = serialize_callback;
|
||||
numbuf_deserialize_callback = deserialize_callback;
|
||||
Py_INCREF(Py_None);
|
||||
result = Py_None;
|
||||
}
|
||||
return result;
|
||||
}
|
||||
|
||||
static PyMethodDef NumbufMethods[] = {
|
||||
{ "serialize_list", serialize_list, METH_VARARGS, "serialize a Python list" },
|
||||
{ "deserialize_list", deserialize_list, METH_VARARGS, "deserialize a Python list" },
|
||||
{ "write_to_buffer", write_to_buffer, METH_VARARGS, "write serialized data to buffer"},
|
||||
{ "read_from_buffer", read_from_buffer, METH_VARARGS, "read serialized data from buffer"},
|
||||
{ "register_callbacks", register_callbacks, METH_VARARGS, "set serialization and deserialization callbacks"},
|
||||
{ NULL, NULL, 0, NULL }
|
||||
};
|
||||
|
||||
PyMODINIT_FUNC initlibnumbuf(void) {
|
||||
PyObject* m;
|
||||
m = Py_InitModule3("libnumbuf", NumbufMethods, "Python C Extension for Numbuf");
|
||||
char numbuf_error[] = "numbuf.error";
|
||||
NumbufError = PyErr_NewException(numbuf_error, NULL, NULL);
|
||||
Py_INCREF(NumbufError);
|
||||
PyModule_AddObject(m, "numbuf_error", NumbufError);
|
||||
import_array();
|
||||
}
|
||||
|
||||
}
|
||||
114
numbuf/python/test/runtest.py
Normal file
114
numbuf/python/test/runtest.py
Normal file
|
|
@ -0,0 +1,114 @@
|
|||
import unittest
|
||||
import numbuf
|
||||
import numpy as np
|
||||
from numpy.testing import assert_equal
|
||||
|
||||
TEST_OBJECTS = [{(1,2) : 1}, {() : 2}, [1, "hello", 3.0], 42, 43L, "hello world",
|
||||
u"x", u"\u262F", 42.0,
|
||||
1L << 62, (1.0, "hi"),
|
||||
None, (None, None), ("hello", None),
|
||||
True, False, (True, False), "hello",
|
||||
{True: "hello", False: "world"},
|
||||
{"hello" : "world", 1: 42, 1.0: 45}, {},
|
||||
np.int8(3), np.int32(4), np.int64(5),
|
||||
np.uint8(3), np.uint32(4), np.uint64(5),
|
||||
np.float32(1.0), np.float64(1.0)]
|
||||
|
||||
class SerializationTests(unittest.TestCase):
|
||||
|
||||
def roundTripTest(self, data):
|
||||
schema, size, serialized = numbuf.serialize_list(data)
|
||||
result = numbuf.deserialize_list(serialized)
|
||||
assert_equal(data, result)
|
||||
|
||||
def testSimple(self):
|
||||
self.roundTripTest([1, 2, 3])
|
||||
self.roundTripTest([1.0, 2.0, 3.0])
|
||||
self.roundTripTest(['hello', 'world'])
|
||||
self.roundTripTest([1, 'hello', 1.0])
|
||||
self.roundTripTest([{'hello': 1.0, 'world': 42}])
|
||||
self.roundTripTest([True, False])
|
||||
|
||||
def testNone(self):
|
||||
self.roundTripTest([1, 2, None, 3])
|
||||
|
||||
def testNested(self):
|
||||
self.roundTripTest([{"hello": {"world": (1, 2, 3)}}])
|
||||
self.roundTripTest([((1,), (1, 2, 3, (4, 5, 6), "string"))])
|
||||
self.roundTripTest([{"hello": [1, 2, 3]}])
|
||||
self.roundTripTest([{"hello": [1, [2, 3]]}])
|
||||
self.roundTripTest([{"hello": (None, 2, [3, 4])}])
|
||||
self.roundTripTest([{"hello": (None, 2, [3, 4], np.ndarray([1.0, 2.0, 3.0]))}])
|
||||
|
||||
def numpyTest(self, t):
|
||||
a = np.random.randint(0, 10, size=(100, 100)).astype(t)
|
||||
self.roundTripTest([a])
|
||||
|
||||
def testArrays(self):
|
||||
for t in ["int8", "uint8", "int16", "uint16", "int32", "uint32", "float32", "float64"]:
|
||||
self.numpyTest(t)
|
||||
|
||||
def testRay(self):
|
||||
for obj in TEST_OBJECTS:
|
||||
self.roundTripTest([obj])
|
||||
|
||||
def testCallback(self):
|
||||
|
||||
class Foo(object):
|
||||
def __init__(self):
|
||||
self.x = 1
|
||||
|
||||
class Bar(object):
|
||||
def __init__(self):
|
||||
self.foo = Foo()
|
||||
|
||||
def serialize(obj):
|
||||
return dict(obj.__dict__, **{"_pytype_": type(obj).__name__})
|
||||
|
||||
def deserialize(obj):
|
||||
if obj["_pytype_"] == "Foo":
|
||||
result = Foo()
|
||||
elif obj["_pytype_"] == "Bar":
|
||||
result = Bar()
|
||||
|
||||
obj.pop("_pytype_", None)
|
||||
result.__dict__ = obj
|
||||
return result
|
||||
|
||||
bar = Bar()
|
||||
bar.foo.x = 42
|
||||
|
||||
numbuf.register_callbacks(serialize, deserialize)
|
||||
|
||||
metadata, size, serialized = numbuf.serialize_list([bar])
|
||||
self.assertEqual(numbuf.deserialize_list(serialized)[0].foo.x, 42)
|
||||
|
||||
def testObjectArray(self):
|
||||
x = np.array([1, 2, "hello"], dtype=object)
|
||||
y = np.array([[1, 2], [3, 4]], dtype=object)
|
||||
|
||||
def myserialize(obj):
|
||||
return {"_pytype_": "numpy.array", "data": obj.tolist()}
|
||||
|
||||
def mydeserialize(obj):
|
||||
if obj["_pytype_"] == "numpy.array":
|
||||
return np.array(obj["data"], dtype=object)
|
||||
|
||||
numbuf.register_callbacks(myserialize, mydeserialize)
|
||||
|
||||
metadata, size, serialized = numbuf.serialize_list([x, y])
|
||||
|
||||
assert_equal(numbuf.deserialize_list(serialized), [x, y])
|
||||
|
||||
def testBuffer(self):
|
||||
for (i, obj) in enumerate(TEST_OBJECTS):
|
||||
schema, size, batch = numbuf.serialize_list([obj])
|
||||
size = size + 4096 # INITIAL_METADATA_SIZE in arrow
|
||||
buff = np.zeros(size, dtype="uint8")
|
||||
metadata_offset = numbuf.write_to_buffer(batch, memoryview(buff))
|
||||
array = numbuf.read_from_buffer(memoryview(buff), schema, metadata_offset)
|
||||
result = numbuf.deserialize_list(array)
|
||||
assert_equal(result[0], obj)
|
||||
|
||||
if __name__ == "__main__":
|
||||
unittest.main(verbosity=2)
|
||||
30
numbuf/setup.py
Normal file
30
numbuf/setup.py
Normal file
|
|
@ -0,0 +1,30 @@
|
|||
import subprocess
|
||||
from setuptools import setup, find_packages, Extension
|
||||
import setuptools.command.install as _install
|
||||
from sys import platform
|
||||
|
||||
extension = ""
|
||||
if platform == "linux" or platform == "linux2":
|
||||
extension = ".so"
|
||||
elif platform == "darwin":
|
||||
extension = ".dylib"
|
||||
|
||||
# Because of relative paths, this must be run from inside numbuf/.
|
||||
|
||||
class install(_install.install):
|
||||
def run(self):
|
||||
subprocess.check_call(["./setup.sh"])
|
||||
subprocess.check_call(["./build.sh"])
|
||||
# Calling _install.install.run(self) does not fetch required packages and
|
||||
# instead performs an old-style install. See command/install.py in
|
||||
# setuptools. So, calling do_egg_install() manually here.
|
||||
self.do_egg_install()
|
||||
|
||||
setup(name="numbuf",
|
||||
version="0.0.1",
|
||||
packages=find_packages(),
|
||||
package_data={"numbuf": ["libnumbuf.so", "libarrow" + extension, "libarrow_io" + extension, "libarrow_ipc" + extension]},
|
||||
cmdclass={"install": install},
|
||||
setup_requires=["numpy"],
|
||||
include_package_data=True,
|
||||
zip_safe=False)
|
||||
21
numbuf/setup.sh
Executable file
21
numbuf/setup.sh
Executable file
|
|
@ -0,0 +1,21 @@
|
|||
#!/usr/bin/env bash
|
||||
|
||||
ROOT_DIR=$(cd "$(dirname "${BASH_SOURCE:-$0}")"; pwd)
|
||||
|
||||
platform="unknown"
|
||||
unamestr="$(uname)"
|
||||
if [[ "$unamestr" == "Linux" ]]; then
|
||||
echo "Platform is linux."
|
||||
platform="linux"
|
||||
elif [[ "$unamestr" == "Darwin" ]]; then
|
||||
echo "Platform is macosx."
|
||||
platform="macosx"
|
||||
else
|
||||
echo "Unrecognized platform."
|
||||
exit 1
|
||||
fi
|
||||
|
||||
pushd "$ROOT_DIR/thirdparty"
|
||||
./download_thirdparty.sh
|
||||
./build_thirdparty.sh
|
||||
popd
|
||||
1
numbuf/thirdparty/arrow
vendored
Submodule
1
numbuf/thirdparty/arrow
vendored
Submodule
|
|
@ -0,0 +1 @@
|
|||
Subproject commit 58bd7bedc63d66d5898297bab25b54dfb67665db
|
||||
26
numbuf/thirdparty/build_thirdparty.sh
vendored
Executable file
26
numbuf/thirdparty/build_thirdparty.sh
vendored
Executable file
|
|
@ -0,0 +1,26 @@
|
|||
#!/bin/bash
|
||||
|
||||
set -x
|
||||
set -e
|
||||
|
||||
TP_DIR=$(cd "$(dirname "${BASH_SOURCE:-$0}")"; pwd)
|
||||
PREFIX=$TP_DIR/installed
|
||||
|
||||
# Determine how many parallel jobs to use for make based on the number of cores
|
||||
unamestr="$(uname)"
|
||||
if [[ "$unamestr" == "Linux" ]]; then
|
||||
PARALLEL=$(nproc)
|
||||
elif [[ "$unamestr" == "Darwin" ]]; then
|
||||
PARALLEL=$(sysctl -n hw.ncpu)
|
||||
echo "Platform is macosx."
|
||||
else
|
||||
echo "Unrecognized platform."
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo "building arrow"
|
||||
cd $TP_DIR/arrow/cpp
|
||||
mkdir -p $TP_DIR/arrow/cpp/build
|
||||
cd $TP_DIR/arrow/cpp/build
|
||||
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_FLAGS="-g" -DCMAKE_CXX_FLAGS="-g" ..
|
||||
make VERBOSE=1 -j$PARALLEL
|
||||
8
numbuf/thirdparty/download_thirdparty.sh
vendored
Executable file
8
numbuf/thirdparty/download_thirdparty.sh
vendored
Executable file
|
|
@ -0,0 +1,8 @@
|
|||
#!/bin/bash
|
||||
|
||||
set -x
|
||||
set -e
|
||||
|
||||
TP_DIR=$(cd "$(dirname "${BASH_SOURCE:-$0}")"; pwd)
|
||||
|
||||
git submodule update --init --recursive -- "$TP_DIR/arrow"
|
||||
75
numbuf/vsprojects/numbuf.vcxproj
Normal file
75
numbuf/vsprojects/numbuf.vcxproj
Normal file
|
|
@ -0,0 +1,75 @@
|
|||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<Project DefaultTargets="Build" ToolsVersion="14.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
|
||||
<ItemGroup Label="ProjectConfigurations">
|
||||
<ProjectConfiguration Include="Debug|Win32">
|
||||
<Configuration>Debug</Configuration>
|
||||
<Platform>Win32</Platform>
|
||||
</ProjectConfiguration>
|
||||
<ProjectConfiguration Include="Release|Win32">
|
||||
<Configuration>Release</Configuration>
|
||||
<Platform>Win32</Platform>
|
||||
</ProjectConfiguration>
|
||||
<ProjectConfiguration Include="Debug|x64">
|
||||
<Configuration>Debug</Configuration>
|
||||
<Platform>x64</Platform>
|
||||
</ProjectConfiguration>
|
||||
<ProjectConfiguration Include="Release|x64">
|
||||
<Configuration>Release</Configuration>
|
||||
<Platform>x64</Platform>
|
||||
</ProjectConfiguration>
|
||||
</ItemGroup>
|
||||
<PropertyGroup Label="Globals">
|
||||
<ProjectGuid>{609D1438-D42D-4CBA-80A5-A1398C3BCC85}</ProjectGuid>
|
||||
<Keyword>Win32Proj</Keyword>
|
||||
</PropertyGroup>
|
||||
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
|
||||
<PropertyGroup Label="Configuration">
|
||||
<PlatformToolset>v140</PlatformToolset>
|
||||
<ConfigurationType>DynamicLibrary</ConfigurationType>
|
||||
</PropertyGroup>
|
||||
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />
|
||||
<ImportGroup Label="ExtensionSettings">
|
||||
</ImportGroup>
|
||||
<ImportGroup Label="Shared">
|
||||
</ImportGroup>
|
||||
<ImportGroup Label="PropertySheets">
|
||||
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
|
||||
<Import Project="$(SolutionDir)vsprojects\base.props" Condition="exists('$(SolutionDir)vsprojects\base.props')" />
|
||||
</ImportGroup>
|
||||
<PropertyGroup Label="UserMacros" />
|
||||
<PropertyGroup>
|
||||
<TargetName>lib$(MSBuildProjectName)</TargetName>
|
||||
<TargetExt>.pyd</TargetExt>
|
||||
</PropertyGroup>
|
||||
<ItemDefinitionGroup>
|
||||
<ClCompile>
|
||||
<AdditionalIncludeDirectories>$(THIRD_PARTY)arrow\cpp\src;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
|
||||
</ClCompile>
|
||||
<Link>
|
||||
<SubSystem>Console</SubSystem>
|
||||
</Link>
|
||||
</ItemDefinitionGroup>
|
||||
<ItemGroup>
|
||||
<ClInclude Include="..\cpp\src\numbuf\dict.h" />
|
||||
<ClInclude Include="..\cpp\src\numbuf\sequence.h" />
|
||||
<ClInclude Include="..\cpp\src\numbuf\tensor.h" />
|
||||
<ClInclude Include="..\python\src\pynumbuf\adapters\numpy.h" />
|
||||
<ClInclude Include="..\python\src\pynumbuf\adapters\python.h" />
|
||||
<ClInclude Include="..\python\src\pynumbuf\adapters\scalars.h" />
|
||||
<ClInclude Include="..\python\src\pynumbuf\memory.h" />
|
||||
</ItemGroup>
|
||||
<ItemGroup>
|
||||
<ClCompile Include="..\cpp\src\numbuf\dict.cc" />
|
||||
<ClCompile Include="..\cpp\src\numbuf\sequence.cc" />
|
||||
<ClCompile Include="..\cpp\src\numbuf\tensor.cc" />
|
||||
<ClCompile Include="..\python\src\pynumbuf\adapters\numpy.cc" />
|
||||
<ClCompile Include="..\python\src\pynumbuf\adapters\python.cc" />
|
||||
<ClCompile Include="..\python\src\pynumbuf\numbuf.cc" />
|
||||
</ItemGroup>
|
||||
<ItemGroup>
|
||||
<ProjectReference Include="$(THIRD_PARTY)arrow\vsprojects\arrow.vcxproj" Condition="exists('$(THIRD_PARTY)arrow\vsprojects\arrow.vcxproj')">
|
||||
<Project>{10e7d8e8-0eeb-46ea-a58d-f9236b5960ad}</Project>
|
||||
</ProjectReference>
|
||||
</ItemGroup>
|
||||
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
|
||||
</Project>
|
||||
60
numbuf/vsprojects/numbuf.vcxproj.filters
Normal file
60
numbuf/vsprojects/numbuf.vcxproj.filters
Normal file
|
|
@ -0,0 +1,60 @@
|
|||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<Project ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
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<ItemGroup>
|
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<Filter Include="Source Files">
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<UniqueIdentifier>{4FC737F1-C7A5-4376-A066-2A32D752A2FF}</UniqueIdentifier>
|
||||
<Extensions>cpp;c;cc;cxx;def;odl;idl;hpj;bat;asm;asmx</Extensions>
|
||||
</Filter>
|
||||
<Filter Include="Header Files">
|
||||
<UniqueIdentifier>{93995380-89BD-4b04-88EB-625FBE52EBFB}</UniqueIdentifier>
|
||||
<Extensions>h;hh;hpp;hxx;hm;inl;inc;xsd</Extensions>
|
||||
</Filter>
|
||||
<Filter Include="Resource Files">
|
||||
<UniqueIdentifier>{67DA6AB6-F800-4c08-8B7A-83BB121AAD01}</UniqueIdentifier>
|
||||
<Extensions>rc;ico;cur;bmp;dlg;rc2;rct;bin;rgs;gif;jpg;jpeg;jpe;resx;tiff;tif;png;wav;mfcribbon-ms</Extensions>
|
||||
</Filter>
|
||||
</ItemGroup>
|
||||
<ItemGroup>
|
||||
<ClCompile Include="..\cpp\src\numbuf\dict.cc">
|
||||
<Filter>Source Files</Filter>
|
||||
</ClCompile>
|
||||
<ClCompile Include="..\cpp\src\numbuf\sequence.cc">
|
||||
<Filter>Source Files</Filter>
|
||||
</ClCompile>
|
||||
<ClCompile Include="..\cpp\src\numbuf\tensor.cc">
|
||||
<Filter>Source Files</Filter>
|
||||
</ClCompile>
|
||||
<ClCompile Include="..\python\src\pynumbuf\adapters\numpy.cc">
|
||||
<Filter>Source Files</Filter>
|
||||
</ClCompile>
|
||||
<ClCompile Include="..\python\src\pynumbuf\adapters\python.cc">
|
||||
<Filter>Source Files</Filter>
|
||||
</ClCompile>
|
||||
<ClCompile Include="..\python\src\pynumbuf\numbuf.cc">
|
||||
<Filter>Source Files</Filter>
|
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</ClCompile>
|
||||
</ItemGroup>
|
||||
<ItemGroup>
|
||||
<ClInclude Include="..\cpp\src\numbuf\dict.h">
|
||||
<Filter>Header Files</Filter>
|
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</ClInclude>
|
||||
<ClInclude Include="..\cpp\src\numbuf\sequence.h">
|
||||
<Filter>Header Files</Filter>
|
||||
</ClInclude>
|
||||
<ClInclude Include="..\cpp\src\numbuf\tensor.h">
|
||||
<Filter>Header Files</Filter>
|
||||
</ClInclude>
|
||||
<ClInclude Include="..\python\src\pynumbuf\adapters\numpy.h">
|
||||
<Filter>Header Files</Filter>
|
||||
</ClInclude>
|
||||
<ClInclude Include="..\python\src\pynumbuf\adapters\python.h">
|
||||
<Filter>Header Files</Filter>
|
||||
</ClInclude>
|
||||
<ClInclude Include="..\python\src\pynumbuf\adapters\scalars.h">
|
||||
<Filter>Header Files</Filter>
|
||||
</ClInclude>
|
||||
<ClInclude Include="..\python\src\pynumbuf\memory.h">
|
||||
<Filter>Header Files</Filter>
|
||||
</ClInclude>
|
||||
</ItemGroup>
|
||||
</Project>
|
||||
Loading…
Add table
Reference in a new issue