master-thesis/python/energy_flow_proper/utilities.py

import stg_helper
from types import ModuleType
from typing import Callable, Tuple, Union, Iterator
from lmfit import minimize, Parameters
import matplotlib.pyplot as plt
import matplotlib.ticker as ticker
import matplotlib
import numpy as np
from numpy.polynomial import Polynomial
import functools
from contextlib import contextmanager
from pathlib import Path
import h5py
import pickle


def get_n_samples(stg: ModuleType) -> int:
    """Get the number of samples from ``stg``."""
    with stg_helper.get_hierarchy_data(stg, read_only=True) as hd:
        return hd.get_samples()


def has_all_samples(stg: ModuleType) -> bool:
    return stg.__HI_number_of_samples == get_n_samples(stg)


def has_all_samples_checker(stg: ModuleType) -> Callable[..., bool]:
    return "Has all samples?", lambda _: has_all_samples(stg)


def peruse_hierarchy_files(base: str) -> Iterator[h5py.File]:
    p = Path(base)
    for i in p.glob("*/*.h5"):
        f = h5py.File(i, "r")
        yield f
        f.close()


def α_apprx(τ, g, w):
    return np.sum(
        g[np.newaxis, :] * np.exp(-w[np.newaxis, :] * (τ[:, np.newaxis])), axis=1
    )


def fit_α(
    α: Callable[[np.ndarray], np.ndarray],
    n: int,
    t_max: float,
    support_points: Union[int, np.ndarray] = 1000,
) -> Tuple[np.ndarray, np.ndarray]:
    """
    Fit the BCF ``α`` to a sum of ``n`` exponentials up to
    ``t_max`` using a number of ``support_points``.
    """

    def residual(fit_params, x, data):
        resid = 0
        w = np.array([fit_params[f"w{i}"] for i in range(n)]) + 1j * np.array(
            [fit_params[f"wi{i}"] for i in range(n)]
        )
        g = np.array([fit_params[f"g{i}"] for i in range(n)]) + 1j * np.array(
            [fit_params[f"gi{i}"] for i in range(n)]
        )
        resid = data - α_apprx(x, g, w)

        return resid.view(float)

    fit_params = Parameters()
    for i in range(n):
        fit_params.add(f"g{i}", value=0.1)
        fit_params.add(f"gi{i}", value=0.1)
        fit_params.add(f"w{i}", value=0.1)
        fit_params.add(f"wi{i}", value=0.1)

    ts = np.asarray(support_points)
    if ts.size < 2:
        ts = np.linspace(0, t_max, support_points)

    out = minimize(residual, fit_params, args=(ts, α(ts)))

    w = np.array([out.params[f"w{i}"] for i in range(n)]) + 1j * np.array(
        [out.params[f"wi{i}"] for i in range(n)]
    )
    g = np.array([out.params[f"g{i}"] for i in range(n)]) + 1j * np.array(
        [out.params[f"gi{i}"] for i in range(n)]
    )

    return w, g


###############################################################################
#                                  Plot Porn                                  #
###############################################################################


def wrap_plot(f):
    def wrapped(*args, ax=None, setup_function=plt.subplots, **kwargs):
        fig = None
        if not ax:
            fig, ax = setup_function()

        ret_val = f(*args, ax=ax, **kwargs)
        return (fig, ax, ret_val) if ret_val else (fig, ax)

    return wrapped


@contextmanager
def hiro_style(*args, **kwargs):
    with plt.style.context("ggplot"):
        with matplotlib.rc_context(
            {
                # "font.family": "serif",
                "text.usetex": False,
                "pgf.rcfonts": False,
                "lines.linewidth": 1,
            }
        ):
            yield True


@wrap_plot
def plot_complex(x, y, *args, ax=None, label="", **kwargs):
    label = label + ", " if (len(label) > 0) else ""
    ax.plot(x, y.real, *args, label=f"{label}real part", **kwargs)
    ax.plot(x, y.imag, *args, label=f"{label}imag part", **kwargs)
    ax.legend()


@wrap_plot
def plot_convergence(x, y, *args, ax=None, label="", transform=lambda y: y, **kwargs):
    label = label + ", " if (len(label) > 0) else ""
    for n, val, std in y[:-1]:
        plt.plot(
            x, transform(val), label=f"{label}n={n}", alpha=n / y[-1][0], linestyle="--"
        )
    ax.errorbar(
        x,
        transform(y[-1][1]),
        yerr=y[-1][2],
        ecolor="yellow",
        label=f"{label}n={y[-1][0]}",
        color="red",
    )


@wrap_plot
def plot_diff_vs_sigma(
    x,
    y,
    reference,
    *args,
    ax=None,
    label="",
    transform=lambda y: y,
    ecolor="yellow",
    **kwargs,
):
    label = label + ", " if (len(label) > 0) else ""
    ax.fill_between(
        x,
        0,
        y[-1][2],
        color=ecolor,
        label=f"{label}$\sigma$",
    )

    for n, val, std in y:
        plt.plot(
            x,
            np.abs(transform(val) - reference),
            label=f"{label}n={n}",
            alpha=n / y[-1][0],
        )


###############################################################################
#                                 Numpy Hacks                                 #
###############################################################################


def e_i(i: int, size: int) -> np.ndarray:
    r"""Cartesian base vector :math:`e_i`."""

    vec = np.zeros(size)
    vec[i] = 1
    return vec


def except_element(array: np.ndarray, index: int) -> np.ndarray:
    mask = [i != index for i in range(array.size)]
    return array[mask]


def poly_real(p: Polynomial) -> Polynomial:
    """Return the real part of ``p``."""
    new = p.copy()
    new.coef = p.coef.real
    return new