mirror of
https://github.com/vale981/master-thesis
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use poetry+flake for numerical experiments
This commit is contained in:
parent
04bd623447
commit
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5 changed files with 951 additions and 0 deletions
1
python/energy_flow_proper/01_zero_temperature/.envrc
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1
python/energy_flow_proper/01_zero_temperature/.envrc
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use_flake
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69
python/energy_flow_proper/01_zero_temperature/config.py
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69
python/energy_flow_proper/01_zero_temperature/config.py
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from hops.core.hierarchy_parameters import HIParams, HiP, IntP, SysP, ResultType
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from hops.core.hierarchyLib import HI
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from hops.util.bcf_fits import get_ohm_g_w
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from hops.util.truncation_schemes import TruncationScheme_Power_multi
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import hops.util.bcf
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import numpy as np
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import hops.util.matrixLib as ml
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from stocproc import StocProc_FFT
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wc = 5
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s = 1
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# The BCF fit
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bcf_terms = 6
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g, w = get_ohm_g_w(bcf_terms, s, wc)
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integration = IntP(t_max=5, t_steps=1000)
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system = SysP(
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H_sys=0.5 * np.array([[1, 0], [0, -1]]),
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L=0.5 * np.array([[0, 1], [1, 0]]),
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psi0=np.array([1, 1]),
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g=g,
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w=w,
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bcf_scale=0.8,
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T=0,
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)
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params = HIParams(
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SysP=system,
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IntP=integration,
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HiP=HiP(
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nonlinear=True,
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normalized_by_hand=True,
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result_type=ResultType.ALL,
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truncation_scheme=TruncationScheme_Power_multi.from_g_w(
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g=g, w=w, p=1, q=0.5, kfac=1.4
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),
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),
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Eta=StocProc_FFT(
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spectral_density=hops.util.bcf.OhmicSD_zeroTemp(
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s,
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1,
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wc,
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),
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alpha=hops.util.bcf.OhmicBCF_zeroTemp(
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s,
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1,
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wc,
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),
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t_max=integration.t_max,
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intgr_tol=1e-3,
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intpl_tol=1e-3,
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negative_frequencies=False,
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),
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EtaTherm=StocProc_FFT(
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spectral_density=hops.util.bcf.Ohmic_StochasticPotentialDensity(
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s, 1, wc, beta=1 / system.__non_key__["T"]
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),
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alpha=hops.util.bcf.Ohmic_StochasticPotentialCorrelations(
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s, 1, wc, beta=1 / system.__non_key__["T"]
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),
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t_max=integration.t_max,
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intgr_tol=1e-3,
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intpl_tol=1e-3,
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negative_frequencies=False,
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)
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if system.__non_key__["T"]
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else None,
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)
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18
python/energy_flow_proper/01_zero_temperature/flake.nix
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18
python/energy_flow_proper/01_zero_temperature/flake.nix
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{
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description = "Zero temperature energy flow with a single qubit coupled to a bath.";
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inputs = {
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nixpkgs.url = "nixpkgs/nixos-unstable";
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utils.url = "github:vale981/hiro-flake-utils";
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};
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outputs = { self, utils, nixpkgs, ... }:
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(utils.lib.poetry2nixWrapper nixpkgs {
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name = "01_zero_temp";
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shellPackages = pkgs: with pkgs; [ pyright ];
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noPackage = true;
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poetryArgs = {
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projectDir = ./.;
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};
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});
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}
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841
python/energy_flow_proper/01_zero_temperature/poetry.lock
generated
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841
python/energy_flow_proper/01_zero_temperature/poetry.lock
generated
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@ -0,0 +1,841 @@
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[[package]]
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name = "asteval"
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version = "0.9.26"
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description = "Safe, minimalistic evaluator of python expression using ast module"
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category = "main"
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optional = false
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python-versions = ">=3.6"
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[[package]]
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name = "binfootprint"
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version = "0.1.0"
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description = "binary representation for simple data structures"
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category = "main"
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optional = false
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python-versions = ">=3.9,<3.11"
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develop = false
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[package.dependencies]
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numpy = "^1.5.1"
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[package.source]
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type = "git"
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url = "https://github.com/vale981/binfootprint"
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reference = "master"
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resolved_reference = "90908d5d746f8e2cef16858eb9ca188713199d2b"
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[[package]]
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name = "black"
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version = "21.12b0"
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description = "The uncompromising code formatter."
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category = "dev"
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optional = false
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python-versions = ">=3.6.2"
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[package.dependencies]
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click = ">=7.1.2"
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mypy-extensions = ">=0.4.3"
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pathspec = ">=0.9.0,<1"
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platformdirs = ">=2"
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tomli = ">=0.2.6,<2.0.0"
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typing-extensions = [
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{version = ">=3.10.0.0", markers = "python_version < \"3.10\""},
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{version = "!=3.10.0.1", markers = "python_version >= \"3.10\""},
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]
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[package.extras]
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colorama = ["colorama (>=0.4.3)"]
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d = ["aiohttp (>=3.7.4)"]
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jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
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python2 = ["typed-ast (>=1.4.3)"]
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uvloop = ["uvloop (>=0.15.2)"]
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[[package]]
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name = "click"
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version = "8.0.3"
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description = "Composable command line interface toolkit"
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category = "main"
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optional = false
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python-versions = ">=3.6"
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[package.dependencies]
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colorama = {version = "*", markers = "platform_system == \"Windows\""}
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[[package]]
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name = "click-spinner"
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version = "0.1.10"
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description = "Spinner for Click"
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category = "main"
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optional = false
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python-versions = "*"
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[package.extras]
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test = ["click", "pytest", "six"]
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[[package]]
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name = "colorama"
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version = "0.4.4"
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description = "Cross-platform colored terminal text."
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category = "main"
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optional = false
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python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
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[[package]]
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name = "cycler"
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version = "0.11.0"
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description = "Composable style cycles"
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category = "main"
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optional = false
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python-versions = ">=3.6"
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[[package]]
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name = "fcspline"
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version = "0.1"
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description = "A fast cubic spline interpolator for real and complex data."
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category = "main"
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optional = false
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python-versions = ">=3.9,<3.11"
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develop = false
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[package.dependencies]
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numpy = "^1.20.3"
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scipy = "^1.7.3"
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[package.source]
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type = "git"
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url = "https://github.com/vale981/fcSpline"
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reference = "master"
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resolved_reference = "6f4940fb5944b3cdda84e552297213dfb5736e13"
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[[package]]
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name = "fonttools"
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version = "4.28.5"
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description = "Tools to manipulate font files"
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category = "main"
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optional = false
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python-versions = ">=3.7"
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[package.extras]
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all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=13.0.0)", "xattr"]
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graphite = ["lz4 (>=1.7.4.2)"]
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interpolatable = ["scipy", "munkres"]
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lxml = ["lxml (>=4.0,<5)"]
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pathops = ["skia-pathops (>=0.5.0)"]
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plot = ["matplotlib"]
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symfont = ["sympy"]
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type1 = ["xattr"]
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ufo = ["fs (>=2.2.0,<3)"]
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unicode = ["unicodedata2 (>=13.0.0)"]
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woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"]
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[[package]]
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name = "future"
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version = "0.18.2"
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description = "Clean single-source support for Python 3 and 2"
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category = "main"
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optional = false
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python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
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[[package]]
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name = "h5py"
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version = "3.6.0"
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description = "Read and write HDF5 files from Python"
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category = "main"
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optional = false
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python-versions = ">=3.7"
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[package.dependencies]
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numpy = ">=1.14.5"
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[[package]]
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name = "hops"
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version = "1.0"
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description = "HOPS implementation of the TU-Dresden Theoretical Quantum Optics Group"
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category = "main"
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optional = false
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python-versions = ">=3.9,<3.11"
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develop = false
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||||
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[package.dependencies]
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||||
binfootprint = {git = "https://github.com/vale981/binfootprint", branch = "master"}
|
||||
click-spinner = "^0.1.10"
|
||||
h5py = "^3.6.0"
|
||||
jobmanager = {git = "https://github.com/vale981/jobmanager", branch = "master"}
|
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matplotlib = "^3.5.0"
|
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numpy = "^1.20.3"
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qutip = "^4.6.2"
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||||
scipy = "^1.7.3"
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stocproc = {git = "https://github.com/vale981/stocproc", branch = "master"}
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typer = "^0.4.0"
|
||||
|
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[package.source]
|
||||
type = "git"
|
||||
url = "git@gitlab.hrz.tu-chemnitz.de:s8896854--tu-dresden.de/hops.git"
|
||||
reference = "main"
|
||||
resolved_reference = "a06c8d4340778ba6c6c3487417ec8c1972e71d47"
|
||||
|
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[[package]]
|
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name = "hopsflow"
|
||||
version = "1.0"
|
||||
description = "Calculating open system bath energy changes with HOPS and analytically."
|
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category = "main"
|
||||
optional = false
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python-versions = ">=3.9,<3.11"
|
||||
develop = false
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|
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[package.dependencies]
|
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lmfit = "^1.0.3"
|
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numpy = "^1.21.4"
|
||||
scipy = "^1.7.3"
|
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sqlitedict = "^1.7.0"
|
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stocproc = {git = "https://github.com/vale981/stocproc", branch = "master"}
|
||||
tqdm = "^4.62.3"
|
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|
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[package.source]
|
||||
type = "git"
|
||||
url = "https://github.com/vale981/hopsflow"
|
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reference = "main"
|
||||
resolved_reference = "487ef681943afe800017cc077d0190d659f463e4"
|
||||
|
||||
[[package]]
|
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name = "jobmanager"
|
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version = "0.3.1"
|
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description = "Python job manager for parallel computing."
|
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category = "main"
|
||||
optional = false
|
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python-versions = ">=3.9,<3.11"
|
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develop = false
|
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|
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[package.dependencies]
|
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binfootprint = {git = "https://github.com/vale981/binfootprint", branch = "master"}
|
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numpy = "^1.21.4"
|
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progression = {git = "https://github.com/vale981/progression", branch = "master"}
|
||||
scipy = "^1.7.3"
|
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sqlitedict = "^1.7.0"
|
||||
|
||||
[package.source]
|
||||
type = "git"
|
||||
url = "https://github.com/vale981/jobmanager"
|
||||
reference = "master"
|
||||
resolved_reference = "2e7d508bbd8732aa2e6a1bf575c5d3d68c86183a"
|
||||
|
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[[package]]
|
||||
name = "kiwisolver"
|
||||
version = "1.3.2"
|
||||
description = "A fast implementation of the Cassowary constraint solver"
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category = "main"
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optional = false
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python-versions = ">=3.7"
|
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|
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[[package]]
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name = "lmfit"
|
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version = "1.0.3"
|
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description = "Least-Squares Minimization with Bounds and Constraints"
|
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category = "main"
|
||||
optional = false
|
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python-versions = ">=3.6"
|
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|
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[package.dependencies]
|
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asteval = ">=0.9.22"
|
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numpy = ">=1.18"
|
||||
scipy = ">=1.4"
|
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uncertainties = ">=3.0.1"
|
||||
|
||||
[[package]]
|
||||
name = "matplotlib"
|
||||
version = "3.5.1"
|
||||
description = "Python plotting package"
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
cycler = ">=0.10"
|
||||
fonttools = ">=4.22.0"
|
||||
kiwisolver = ">=1.0.1"
|
||||
numpy = ">=1.17"
|
||||
packaging = ">=20.0"
|
||||
pillow = ">=6.2.0"
|
||||
pyparsing = ">=2.2.1"
|
||||
python-dateutil = ">=2.7"
|
||||
setuptools_scm = ">=4"
|
||||
|
||||
[[package]]
|
||||
name = "mpmath"
|
||||
version = "1.2.1"
|
||||
description = "Python library for arbitrary-precision floating-point arithmetic"
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
|
||||
[package.extras]
|
||||
develop = ["pytest (>=4.6)", "pycodestyle", "pytest-cov", "codecov", "wheel"]
|
||||
tests = ["pytest (>=4.6)"]
|
||||
|
||||
[[package]]
|
||||
name = "mypy-extensions"
|
||||
version = "0.4.3"
|
||||
description = "Experimental type system extensions for programs checked with the mypy typechecker."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
|
||||
[[package]]
|
||||
name = "numpy"
|
||||
version = "1.22.1"
|
||||
description = "NumPy is the fundamental package for array computing with Python."
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[[package]]
|
||||
name = "packaging"
|
||||
version = "21.3"
|
||||
description = "Core utilities for Python packages"
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[package.dependencies]
|
||||
pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
|
||||
|
||||
[[package]]
|
||||
name = "pathspec"
|
||||
version = "0.9.0"
|
||||
description = "Utility library for gitignore style pattern matching of file paths."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
|
||||
|
||||
[[package]]
|
||||
name = "pillow"
|
||||
version = "9.0.0"
|
||||
description = "Python Imaging Library (Fork)"
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "platformdirs"
|
||||
version = "2.4.1"
|
||||
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.extras]
|
||||
docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
|
||||
test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"]
|
||||
|
||||
[[package]]
|
||||
name = "progression"
|
||||
version = "0.1.4"
|
||||
description = "A python progress bar in ascii art."
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = ">=3.9,<3.11"
|
||||
develop = false
|
||||
|
||||
[package.source]
|
||||
type = "git"
|
||||
url = "https://github.com/vale981/progression"
|
||||
reference = "master"
|
||||
resolved_reference = "ade6d574ad7002539f3b421f8a4b3d2d738f8fe8"
|
||||
|
||||
[[package]]
|
||||
name = "pyparsing"
|
||||
version = "3.0.6"
|
||||
description = "Python parsing module"
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[package.extras]
|
||||
diagrams = ["jinja2", "railroad-diagrams"]
|
||||
|
||||
[[package]]
|
||||
name = "python-dateutil"
|
||||
version = "2.8.2"
|
||||
description = "Extensions to the standard Python datetime module"
|
||||
category = "main"
|
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|
||||
{file = "scipy-1.7.3.tar.gz", hash = "sha256:ab5875facfdef77e0a47d5fd39ea178b58e60e454a4c85aa1e52fcb80db7babf"},
|
||||
]
|
||||
setuptools-scm = [
|
||||
{file = "setuptools_scm-6.3.2-py3-none-any.whl", hash = "sha256:4c64444b1d49c4063ae60bfe1680f611c8b13833d556fd1d6050c0023162a119"},
|
||||
{file = "setuptools_scm-6.3.2.tar.gz", hash = "sha256:a49aa8081eeb3514eb9728fa5040f2eaa962d6c6f4ec9c32f6c1fba88f88a0f2"},
|
||||
]
|
||||
six = [
|
||||
{file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
|
||||
{file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"},
|
||||
]
|
||||
sqlitedict = [
|
||||
{file = "sqlitedict-1.7.0.tar.gz", hash = "sha256:2affcc301aacd4da7511692601ecbde392294205af418498f7d6d3ec0dbcad56"},
|
||||
]
|
||||
stocproc = []
|
||||
tomli = [
|
||||
{file = "tomli-1.2.3-py3-none-any.whl", hash = "sha256:e3069e4be3ead9668e21cb9b074cd948f7b3113fd9c8bba083f48247aab8b11c"},
|
||||
{file = "tomli-1.2.3.tar.gz", hash = "sha256:05b6166bff487dc068d322585c7ea4ef78deed501cc124060e0f238e89a9231f"},
|
||||
]
|
||||
tqdm = [
|
||||
{file = "tqdm-4.62.3-py2.py3-none-any.whl", hash = "sha256:8dd278a422499cd6b727e6ae4061c40b48fce8b76d1ccbf5d34fca9b7f925b0c"},
|
||||
{file = "tqdm-4.62.3.tar.gz", hash = "sha256:d359de7217506c9851b7869f3708d8ee53ed70a1b8edbba4dbcb47442592920d"},
|
||||
]
|
||||
typer = [
|
||||
{file = "typer-0.4.0-py3-none-any.whl", hash = "sha256:d81169725140423d072df464cad1ff25ee154ef381aaf5b8225352ea187ca338"},
|
||||
{file = "typer-0.4.0.tar.gz", hash = "sha256:63c3aeab0549750ffe40da79a1b524f60e08a2cbc3126c520ebf2eeaf507f5dd"},
|
||||
]
|
||||
typing-extensions = [
|
||||
{file = "typing_extensions-4.0.1-py3-none-any.whl", hash = "sha256:7f001e5ac290a0c0401508864c7ec868be4e701886d5b573a9528ed3973d9d3b"},
|
||||
{file = "typing_extensions-4.0.1.tar.gz", hash = "sha256:4ca091dea149f945ec56afb48dae714f21e8692ef22a395223bcd328961b6a0e"},
|
||||
]
|
||||
uncertainties = [
|
||||
{file = "uncertainties-3.1.6-py2.py3-none-any.whl", hash = "sha256:cb4a66d5ceda006475ec845bf43ee8956c26138b08f93c41851c25a4ffe19a33"},
|
||||
{file = "uncertainties-3.1.6.tar.gz", hash = "sha256:7c4db5aaafd227e95485b61fba5d235dc8133aeecd98f8fc1224c038ce063e2d"},
|
||||
]
|
||||
22
python/energy_flow_proper/01_zero_temperature/pyproject.toml
Normal file
22
python/energy_flow_proper/01_zero_temperature/pyproject.toml
Normal file
|
|
@ -0,0 +1,22 @@
|
|||
[tool.poetry]
|
||||
name = "01_zero_temp"
|
||||
version = "0.1.0"
|
||||
description = "Zero temperature energy flow with a single qubit coupled to a bath."
|
||||
authors = ["Valentin Boettcher <hiro@protagon.space>"]
|
||||
license = "GPLv3"
|
||||
|
||||
[tool.poetry.dependencies]
|
||||
python = ">=3.9,<3.11"
|
||||
numpy = "^1.20.3"
|
||||
scipy = "^1.7.3"
|
||||
stocproc = { git = "https://github.com/vale981/stocproc" }
|
||||
hops = { git = "git@gitlab.hrz.tu-chemnitz.de:s8896854--tu-dresden.de/hops.git", branch="main" }
|
||||
hopsflow = { git = "https://github.com/vale981/hopsflow", branch="main" }
|
||||
matplotlib = "^3.5.0"
|
||||
|
||||
[tool.poetry.dev-dependencies]
|
||||
black = "^21.12b0"
|
||||
|
||||
[build-system]
|
||||
requires = ["poetry-core>=1.0.0"]
|
||||
build-backend = "poetry.core.masonry.api"
|
||||
Loading…
Add table
Reference in a new issue