also pickle

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valentin.boettcher@mailbox.tu-dresden.de 2023-05-11 14:02:18 -04:00
parent 3f25d296c2
commit 883ce94c6c
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GPG key ID: E034E12B7AF56ACE
52 changed files with 4176 additions and 3975 deletions

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@ -2,6 +2,7 @@ import matplotlib
import matplotlib.pyplot as plt
import os
from pathlib import Path
import pickle
from contextlib import contextmanager
import numpy as np
@ -16,7 +17,9 @@ fig_path = Path(os.getcwd()) / "figures"
val_path = Path(os.getcwd()) / "values"
def export_fig(name, fig=None, x_scaling=1, y_scaling=0.4, tikz=True, **kwargs):
def export_fig(
name, fig=None, x_scaling=1, y_scaling=0.4, tikz=True, save_pickle=True, **kwargs
):
fig_path.mkdir(parents=True, exist_ok=True)
if fig is None:
fig = plt.gcf()
@ -44,6 +47,10 @@ def export_fig(name, fig=None, x_scaling=1, y_scaling=0.4, tikz=True, **kwargs):
**kwargs,
)
if save_pickle:
with open(fig_path / f"{name}.pickle", "wb") as file:
pickle.dump(fig, file)
def scientific_round(val, *err, retprec=False):
"""Scientifically rounds the values to the given errors."""

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@ -26,10 +26,10 @@
python = pkgs: pkgs.python39Full;
shellOverride = (pkgs: oldAttrs: {
shellHook = ''
export PYTHONPATH=/home/hiro/src/stocproc/:$PYTHONPATH
export PYTHONPATH=/home/hiro/src/two_qubit_model/:$PYTHONPATH
export PYTHONPATH=/home/hiro/src/hops/:$PYTHONPATH
export PYTHONPATH=/home/hiro/src/hopsflow/:$PYTHONPATH
# export PYTHONPATH=/home/hiro/src/stocproc/:$PYTHONPATH
# export PYTHONPATH=/home/hiro/src/two_qubit_model/:$PYTHONPATH
# export PYTHONPATH=/home/hiro/src/hops/:$PYTHONPATH
# export PYTHONPATH=/home/hiro/src/hopsflow/:$PYTHONPATH
export LD_LIBRARY_PATH="${(pkgs.lib.makeLibraryPath [pkgs.arb])}"
# '';
});

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@ -60,6 +60,8 @@ We shift so that we just overlap with coupling/decoupling and one above.
baseline = models[3]
#+end_src
#+RESULTS:
#+begin_src jupyter-python
ot.plot_cycle(baseline)
@ -67,7 +69,7 @@ We shift so that we just overlap with coupling/decoupling and one above.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/02cbbf58cd0cbe9a198d4e1b1ca05e1435224c50.svg]]
[[file:./.ob-jupyter/85082ca1e70888f4feae9d4bf5a0ea0a0f45b08a.svg]]
#+begin_src jupyter-python :tangle no
#ot.plot_cycles(models, bath=0, legend=True)
@ -91,7 +93,7 @@ We shift so that we just overlap with coupling/decoupling and one above.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/2eaccf65458d4ed821c07abbb83664ee16b423f9.svg]]
[[file:./.ob-jupyter/aceb237b37f0eef4754a27ed3ee238133aa9db06.svg]]
** Integrate
Here we integrate/simulate the models. This should be run on the
@ -119,7 +121,7 @@ This plots the full energy overview for the baseline model.
#+RESULTS:
:RESULTS:
: \(N=80000\)
[[file:./.ob-jupyter/9f290df44db1418e0b27a61a97d2591f6845fa65.svg]]
[[file:./.ob-jupyter/4e700e6b13e30f8557fcc330ee71d08ec472489d.svg]]
:END:
We would like to know how close all of this comes to the thermal states.
@ -175,7 +177,7 @@ We would like to know how close all of this comes to the thermal states.
/nix/store/x2w7bp64b3isjcw3ps8xsadrhxsnbpwh-python3-3.9.15-env/lib/python3.9/site-packages/matplotlib/axes/_axes.py:5346: ComplexWarning: Casting complex values to real discards the imaginary part
pts[N+2:, 1] = dep2slice[::-1]
#+end_example
[[file:./.ob-jupyter/412ae179270758c9b9892f2e1a93b5583ede630b.svg]]
[[file:./.ob-jupyter/75fa2fe14d11490c47d2bf0c629822f9a03e6784.svg]]
:END:
Plotting the pauli matrix expectation values, we can see that the
@ -186,7 +188,7 @@ dynamics only take place on the z-axis. This is addressed in [[id:9d7a11f2-f479-
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/ce6428315398ce5b39b5c39aae9d2b1cbdfd20f8.svg]]
[[file:./.ob-jupyter/746d8e3986e828734631ca1ab8a8bce243963588.svg]]
Let us plot an overview of the work done by system and interaction
modulation over a cycle for the baseline model.
@ -196,7 +198,7 @@ modulation over a cycle for the baseline model.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/e11fc10ff666262bc6ab9abedc2cb0de38262905.svg]]
[[file:./.ob-jupyter/e05d323e86738a3362e6c70adc16bd5d940e5cdd.svg]]
*** Shifted Models
Let us print the power output (relative to the baseline = unshifted model) and efficiency.
@ -207,17 +209,17 @@ Let us print the power output (relative to the baseline = unshifted model) and e
#+RESULTS:
#+begin_example
-2.7704455654085876 -2.5219916727767804
-2.034015641972767 -1.6675487518853185
0.571544457513159 0.19650010500179352
1.0 0.30209537308799783
1.1652434363371367 0.3239348992880912
1.6254413169874071 0.3309674632505577
1.6802797038561466 0.3190991034856301
1.6058539780552505 0.2979616403269744
1.413212538480568 0.26307105710019735
0.7332591894799324 0.1434372231954891
-1.2500012707944386 -0.29523872560546577
-2.77597511693978 -2.4772877227717958
-2.0434846540636498 -1.6243768550730728
0.5710213861808199 0.19310160522534914
1.0 0.3002164459369506
1.1580729241081245 0.3201551362641393
1.621073860181052 0.32914493962691976
1.676329717306901 0.3155858623648209
1.6056907132267833 0.29627949690062266
1.4297898620293028 0.264279816138587
0.7161356715968495 0.13903993767016806
-1.2535087048383218 -0.29154092061712156
#+end_example
@ -229,7 +231,7 @@ size to check convergence.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/8471d776db4404270d3df20b7173e59f783b92ba.svg]]
[[file:./.ob-jupyter/c671a1b46de1f5b65905925fb69604e13a924e19.svg]]
We see that we get a pretty good picture after about 30k-40k samples.
@ -240,7 +242,7 @@ This is an overview over powers and the efficiency.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/50e0848230990f02d9ad40c7e049bcf8c6dcebc7.svg]]
[[file:./.ob-jupyter/c134d0ea85b5900cc5fc809ee73e68d332d429d6.svg]]
The best shift:
#+begin_src jupyter-python
@ -261,7 +263,7 @@ and the best shift model.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/60efd5889fe957f7b8cfe8d446f9953a95c516c9.svg]]
[[file:./.ob-jupyter/f7afc8eb774b72b6f9a3080a0884226164759391.svg]]
Let us plot the interaction power in the steady state for baseline and
@ -315,7 +317,7 @@ best-shift. We have to shift the time to make them overlap correctly.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/479a2efc17d04e372b0a09cfe1a97f48da88fa19.svg]]
[[file:./.ob-jupyter/3e6540b6d222f368a38f57540b7c70c5758f5b99.svg]]
Let us zoom in on the cold bath decoupling process to understnad this better.
@ -355,7 +357,7 @@ Let us zoom in on the cold bath decoupling process to understnad this better.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/fa8d96bb86b08eaed1c7d3fe969e9a82c38a03c7.svg]]
[[file:./.ob-jupyter/089f655a55a69cbc238eda6899340662091d2ca0.svg]]
* Slower switching
@ -393,8 +395,8 @@ switch slower.
#+RESULTS:
:RESULTS:
: <matplotlib.legend.Legend at 0x7f6ce04d5d60>
[[file:./.ob-jupyter/4cc96e897c1648694dbc559354d2868d6bee8dd0.svg]]
: <matplotlib.legend.Legend at 0x7fa23abe1d30>
[[file:./.ob-jupyter/2dced993880319a85c1923005f6b88e6bc158f64.svg]]
:END:
@ -420,17 +422,17 @@ Let us look at power and efficiency.
#+RESULTS:
#+begin_example
-0.18 0.12 80000 -0.7534604455561659 -108.77944601456684 (-0.6547883379568094, 0.4330061221888589)
-0.12 0.12 80000 0.5591648896822077 -14.974955411404467 (0.28325656807481425, 0.4330061221888589)
-0.06 0.12 80000 0.9985149794296736 0.0037407432686098474 (0.433043529621545, 0.4330061221888589)
0.0 0.12 80000 1.0 0.0 (0.4330061221888589, 0.4330061221888589)
0.06 0.12 80000 0.991206944683175 0.23007686496274715 (0.4353068908384864, 0.4330061221888589)
0.12 0.12 80000 1.1339755806282883 0.3265587668820624 (0.43627170985767955, 0.4330061221888589)
0.18 0.12 80000 1.297675283650504 -2.9821368425732797 (0.4031847537631261, 0.4330061221888589)
0.24 0.12 80000 1.2031272812376834 -7.638926235390614 (0.3566168598349528, 0.4330061221888589)
0.3 0.12 80000 0.7381994151953918 -20.86521478070438 (0.22435397438181512, 0.4330061221888589)
0.36 0.12 80000 -0.45819153140116126 -60.284418918547836 (-0.16983806699661946, 0.4330061221888589)
0.42 0.12 80000 -1.4846084056353754 -118.88415735590576 (-0.7558354513701987, 0.4330061221888589)
-0.18 0.18 80000 -0.7534604455561659 -108.77944601456684 (-0.6547883379568094, 0.4330061221888589)
-0.12 0.18 80000 0.5591648896822077 -14.974955411404467 (0.28325656807481425, 0.4330061221888589)
-0.06 0.18 80000 0.9985149794296736 0.0037407432686098474 (0.433043529621545, 0.4330061221888589)
0.0 0.18 80000 1.0 0.0 (0.4330061221888589, 0.4330061221888589)
0.06 0.18 80000 0.991206944683175 0.23007686496274715 (0.4353068908384864, 0.4330061221888589)
0.12 0.18 80000 1.1339755806282883 0.3265587668820624 (0.43627170985767955, 0.4330061221888589)
0.18 0.18 80000 1.297675283650504 -2.9821368425732797 (0.4031847537631261, 0.4330061221888589)
0.24 0.18 80000 1.2031272812376834 -7.638926235390614 (0.3566168598349528, 0.4330061221888589)
0.3 0.18 80000 0.7381994151953918 -20.86521478070438 (0.22435397438181512, 0.4330061221888589)
0.36 0.18 80000 -0.45819153140116126 -60.284418918547836 (-0.16983806699661946, 0.4330061221888589)
0.42 0.18 80000 -1.4846084056353754 -118.88415735590576 (-0.7558354513701987, 0.4330061221888589)
#+end_example
Here, we contrast the slow/fast coupling modulation protocols.
@ -448,7 +450,7 @@ Here, we contrast the slow/fast coupling modulation protocols.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/dfee46d2b1411c9ca3f0619ae9460a2435bd0825.svg]]
[[file:./.ob-jupyter/d874adc97bcc335737347c1205a48c7b39561198.svg]]
Aho! The trick is just to slow down the coupling switching.
@ -473,7 +475,7 @@ Let's contrast the energy change dynamics in slow vs fast modulation
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/739b3f82650ec9b841aadeb72d8ff4bb04ecb999.svg]]
[[file:./.ob-jupyter/5418d985119098ea7dd34a612cee7193d550431c.svg]]
Now let's try to find out why the efficiency improved.
@ -498,7 +500,7 @@ Now let's try to find out why the efficiency improved.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/562aa3c2c2a3c3c1a83020137bdbd45bbe0f550d.svg]]
[[file:./.ob-jupyter/9cecea40e225eaae34f9003fdf7e004ea0463e84.svg]]
Way less energy is dumped into the cold bath.
#+begin_src jupyter-python
t, rel_short_cold = ot.val_relative_to_steady(
@ -556,7 +558,7 @@ Way less energy is dumped into the cold bath.
: + (left_i[1] / (right_i[1]) ** 2 * right_i[2]) ** 2
: /home/hiro/src/hopsflow/hopsflow/util.py:334: RuntimeWarning: invalid value encountered in divide
: + (left_i[1] / (right_i[1]) ** 2 * right_i[2]) ** 2
[[file:./.ob-jupyter/e773c9a5072cc7643a93d1f05180f5083f93a823.svg]]
[[file:./.ob-jupyter/8cc13fa6fb6a9a90c4d74df045df24daeb3632cb.svg]]
:END:
* Slower switching + Only Cold Bath Coupling Shifted
@ -578,6 +580,80 @@ The last section gave me the hunch, that only this shift matters.
ot.integrate_online_multi(cold_models, 1, increment=1, analyze_kwargs=dict(every=10_000))
#+end_src
#+RESULTS:
:RESULTS:
#+begin_example
[INFO hops.core.integration 660003] Choosing the nonlinear integrator.
[INFO root 660003] Starting analysis process.
[INFO root 660003] Started analysis process with pid 660744.
/home/hiro/src/hops/hops/core/hierarchy_data.py:564: UserWarning: test_file_version FAILED with exception Unable to open file (file is already open for write/SWMR write (may use <h5clear file> to clear file consistency flags))
warnings.warn(
/home/hiro/src/hops/hops/core/hierarchy_data.py:567: UserWarning: hdf5_name .data/a86b8a23ecd962904a2008808f85b00b9c337e36dc6bebe3b806343510f0ec7f/_b/a86b8a23ecd962904a2008808f85b00b9c337e36dc6bebe3b806343510f0ec7f_b5106778b26241a26c10be1488e24172_1.h5
warnings.warn("hdf5_name {}".format(self.hdf5_name))
/home/hiro/src/hops/hops/core/hierarchy_data.py:570: UserWarning: Moving .data/a86b8a23ecd962904a2008808f85b00b9c337e36dc6bebe3b806343510f0ec7f/_b/a86b8a23ecd962904a2008808f85b00b9c337e36dc6bebe3b806343510f0ec7f_b5106778b26241a26c10be1488e24172_1.h5 to .data/a86b8a23ecd962904a2008808f85b00b9c337e36dc6bebe3b806343510f0ec7f/_b/a86b8a23ecd962904a2008808f85b00b9c337e36dc6bebe3b806343510f0ec7f_b5106778b26241a26c10be1488e24172_1.h5backup_1683828067.6098497 and starting fresh.
warnings.warn(
[INFO hops.core.hierarchy_data 660003] Creating the streaming fifo at: /home/hiro/Documents/Projects/UNI/master/eflow_paper/python/otto_motor/subprojects/cycle_shift/results_a86b8a23ecd962904a2008808f85b00b9c337e36dc6bebe3b806343510f0ec7f.fifo
[INFO hops.core.integration 660003] Using 16 integrators.
[INFO hops.core.integration 660003] Some 1 trajectories have to be integrated.
[INFO hops.core.integration 660003] Using 1001 hierarchy states.
0% 0/1 [00:00<?, ?it/s][INFO hops.core.signal_delay 660003] caught sig 'SIGINT'
0% 0/1 [00:10<?, ?it/s]
[INFO hops.core.signal_delay 660003] caught 1 signal(s)
[INFO hops.core.signal_delay 660003] emit signal 'SIGINT'
[INFO hops.core.signal_delay 660003] caught sig 'SIGINT'
2023-05-11 14:01:17,869 ERROR worker.py:94 -- Unhandled error (suppress with 'RAY_IGNORE_UNHANDLED_ERRORS=1'): The worker died unexpectedly while executing this task. Check python-core-worker-*.log files for more information.
[INFO hops.core.signal_delay 660003] caught 1 signal(s)
[INFO hops.core.signal_delay 660003] emit signal 'SIGINT'
#+end_example
# [goto error]
#+begin_example
---------------------------------------------------------------------------
KeyboardInterrupt Traceback (most recent call last)
Cell In[26], line 1
----> 1 ot.integrate_online_multi(cold_models, 1, increment=1, analyze_kwargs=dict(every=10_000))
File ~/Documents/Projects/UNI/master/eflow_paper/python/otto_motor/subprojects/cycle_shift/otto_utilities.py:387, in integrate_online_multi(models, n, increment, *args, **kwargs)
 385 count = get_sample_count(model)
 386 if count < current_target:
--> 387 integrate_online(model, current_target, *args, **kwargs)
 389 target += increment
File ~/Documents/Projects/UNI/master/eflow_paper/python/otto_motor/subprojects/cycle_shift/otto_utilities.py:360, in integrate_online(model, n, stream_folder, **kwargs)
 359 def integrate_online(model, n, stream_folder=None, **kwargs):
--> 360 aux.integrate(
 361  model,
 362  n,
 363  stream_file=("" if stream_folder is None else stream_folder)
 364  + f"results_{model.hexhash}.fifo",
 365  analyze=True,
 366  **kwargs,
 367  )
File ~/src/two_qubit_model/hiro_models/model_auxiliary.py:201, in integrate(model, n, data_path, clear_pd, single_process, stream_file, analyze, results_path, analyze_kwargs)
 199 supervisor.integrate_single_process(clear_pd)
 200 else:
--> 201 supervisor.integrate(clear_pd)
 203 cleanup(0)
File ~/src/hops/hops/core/signal_delay.py:87, in sig_delay.__exit__(self, exc_type, exc_val, exc_tb)
 84 if len(self.sigh.sigs_caught) > 0 and self.handler is not None:
 85 self.handler(self.sigh.sigs_caught)
---> 87 self._restore()
File ~/src/hops/hops/core/signal_delay.py:68, in sig_delay._restore(self)
 66 for i, s in enumerate(self.sigs):
 67 signal.signal(s, self.old_handlers[i])
---> 68 self.sigh.emit()
File ~/src/hops/hops/core/signal_delay.py:42, in SigHandler.emit(self)
 40 for s in self.sigs_caught:
 41 log.info("emit signal '{}'".format(SIG_MAP[s]))
---> 42 os.kill(os.getpid(), s)
KeyboardInterrupt:
#+end_example
:END:
#+begin_src jupyter-julia
aux.import_results(other_data_path="taurus/.data", other_results_path="taurus/results", models_to_import=cold_models)
#+end_src
@ -600,7 +676,7 @@ The last section gave me the hunch, that only this shift matters.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/90dc100de7e68a738757c7ceec88d138523edd24.svg]]
[[file:./.ob-jupyter/452910da5da1d556764e6b6d81e8c15cd2ce5a67.svg]]
#+begin_src jupyter-python
@ -648,7 +724,7 @@ Let's contrast all three protocols.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/c3ba93c44254765a56fc0ba9f0d578fa5ebfa682.svg]]
[[file:./.ob-jupyter/0566a3f8b3266b69979cc58b4459835bba36744d.svg]]
And do it again, but in a more convenient format.
#+begin_src jupyter-python
@ -657,7 +733,7 @@ And do it again, but in a more convenient format.
#+end_src
#+RESULTS:
[[file:./.ob-jupyter/25b9c2b69b9e6bea35b3b7765c35ac370ddb6e24.svg]]
[[file:./.ob-jupyter/66f9994b67426aae52943a1f9ab6540b6fcadeff.svg]]
* Findings
- coupling overlap doesn't help much
@ -715,8 +791,8 @@ Let's plot the pauli expectation values.
#+RESULTS:
:RESULTS:
[[file:./.ob-jupyter/e0388abacb7b8d8791b4a243661de3e7cf92321e.svg]]
[[file:./.ob-jupyter/bf8f086e5b8211108f5481f511133342ddfb5c33.svg]]
[[file:./.ob-jupyter/216aad96418805e8cbb925e939bb261bdb09c332.svg]]
[[file:./.ob-jupyter/ed2cd60a871ccc8b23781492e0b98084bae04018.svg]]
:END:
#+begin_src jupyter-python
@ -750,6 +826,6 @@ Interestingly, even with the too-fast switching we have greater power, and great
#+RESULTS:
:RESULTS:
[[file:./.ob-jupyter/5639272b64cefcf447899df6ecf4d49baf35988d.svg]]
[[file:./.ob-jupyter/e0adfb01a3b456c2a8a22ecf281cbb7e914939a6.svg]]
[[file:./.ob-jupyter/48801c84dacb82ca9d37f0af0519727e298ec1fd.svg]]
[[file:./.ob-jupyter/0ef615f736de27bf2129d27452b3f55fb30ff82e.svg]]
:END: