new scan definitions, hopefully this will work

python/otto_motor/otto_baseline.org

@@ -571,7 +571,7 @@ A basic otto cycle that has a finite power output but without resonance.
       T=[1, 4],
       therm_methods=["tanhsinh", "tanhsinh"],
       Δ=1,
-      num_cycles=4,
+      num_cycles=5,
       Θ=1.5 / 0.05,
       dt=0.01/5,
       timings_H=p_H,
@@ -591,7 +591,7 @@ coupling we change the switching speed of the interaction and the coupling stren
 
 
 #+begin_src jupyter-python
-  δs = np.round(np.linspace(.1, .5, 3), 3)
+  δs = np.round(np.linspace(.3, .5, 3), 3)
   τ_Is = np.round(np.linspace(.01, .3, 3), 3)
   τ_Is
 #+end_src

python/otto_motor/poetry.lock

@@ -81,7 +81,7 @@ test = ["coverage", "pytest", "pytest-cov"]
 
 [[package]]
 name = "asttokens"
-version = "2.2.0"
+version = "2.2.1"
 description = "Annotate AST trees with source code positions"
 category = "main"
 optional = false
@@ -135,7 +135,7 @@ test-tox-coverage = ["coverage (>=5.5)"]
 type = "git"
 url = "https://github.com/beartype/beartype"
 reference = "main"
-resolved_reference = "ecb059a5200c460d76a9741f788e06059ab48a9d"
+resolved_reference = "52ad2efbb8e460fcc28b8a49a8ae4d1b4c58f1aa"
 
 [[package]]
 name = "beautifulsoup4"
@@ -214,7 +214,7 @@ dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0
 
 [[package]]
 name = "certifi"
-version = "2022.9.24"
+version = "2022.12.7"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
@@ -404,15 +404,15 @@ resolved_reference = "ba011bb815a4212ac842db513235661dc9c69ddb"
 
 [[package]]
 name = "filelock"
-version = "3.8.0"
+version = "3.8.2"
 description = "A platform independent file lock."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["furo (>=2022.6.21)", "sphinx (>=5.1.1)", "sphinx-autodoc-typehints (>=1.19.1)"]
-testing = ["covdefaults (>=2.2)", "coverage (>=6.4.2)", "pytest (>=7.1.2)", "pytest-cov (>=3)", "pytest-timeout (>=2.1)"]
+docs = ["furo (>=2022.9.29)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"]
+testing = ["covdefaults (>=2.2.2)", "coverage (>=6.5)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)"]
 
 [[package]]
 name = "fonttools"
@@ -497,7 +497,7 @@ qutip = "^4.6.3"
 type = "git"
 url = "git@github.com:vale981/two_qubit_model.git"
 reference = "main"
-resolved_reference = "098c83ab44b811e22b6c9d69be83c522596e3577"
+resolved_reference = "def9e607d873cf8f90a493afb666a71735c820b4"
 
 [[package]]
 name = "hops"
@@ -558,7 +558,7 @@ tqdm = "^4.62.3"
 type = "git"
 url = "https://github.com/vale981/hopsflow"
 reference = "main"
-resolved_reference = "e27e38b656b18e0bf3066d72e76ed1d467f26a5c"
+resolved_reference = "98244a388f70f2b57f6dbb8728ae631872e486aa"
 
 [[package]]
 name = "humanfriendly"
@@ -665,7 +665,7 @@ python-versions = "*"
 
 [[package]]
 name = "ipywidgets"
-version = "8.0.2"
+version = "8.0.3"
 description = "Jupyter interactive widgets"
 category = "main"
 optional = false
@@ -745,7 +745,7 @@ qtconsole = "*"
 
 [[package]]
 name = "jupyter-client"
-version = "7.4.7"
+version = "7.4.8"
 description = "Jupyter protocol implementation and client libraries"
 category = "main"
 optional = false
@@ -837,7 +837,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "jupyterlab-widgets"
-version = "3.0.3"
+version = "3.0.4"
 description = "Jupyter interactive widgets for JupyterLab"
 category = "main"
 optional = false
@@ -992,7 +992,7 @@ test = ["black", "check-manifest", "flake8", "ipykernel", "ipython (<8.0.0)", "i
 
 [[package]]
 name = "nbconvert"
-version = "7.2.5"
+version = "7.2.6"
 description = "Converting Jupyter Notebooks"
 category = "main"
 optional = false
@@ -1017,12 +1017,12 @@ tinycss2 = "*"
 traitlets = ">=5.0"
 
 [package.extras]
-all = ["ipykernel", "ipython", "ipywidgets (>=7)", "myst-parser", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"]
-docs = ["ipython", "myst-parser", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"]
-qtpdf = ["pyqtwebengine (>=5.15)"]
+all = ["nbconvert[docs,qtpdf,serve,test,webpdf]"]
+docs = ["ipykernel", "ipython", "myst-parser", "nbsphinx (>=0.2.12)", "pydata-sphinx-theme", "sphinx (==5.0.2)"]
+qtpdf = ["nbconvert[qtpng]"]
 qtpng = ["pyqtwebengine (>=5.15)"]
 serve = ["tornado (>=6.1)"]
-test = ["ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)", "pytest", "pytest-cov", "pytest-dependency"]
+test = ["ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)", "pytest", "pytest-dependency"]
 webpdf = ["pyppeteer (>=1,<1.1)"]
 
 [[package]]
@@ -1120,14 +1120,11 @@ tests = ["pytest", "pytest-cov", "pytest-pep8"]
 
 [[package]]
 name = "packaging"
-version = "21.3"
+version = "22.0"
 description = "Core utilities for Python packages"
 category = "main"
 optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
+python-versions = ">=3.7"
 
 [[package]]
 name = "pandas"
@@ -1170,7 +1167,7 @@ testing = ["docopt", "pytest (<6.0.0)"]
 
 [[package]]
 name = "pathspec"
-version = "0.10.2"
+version = "0.10.3"
 description = "Utility library for gitignore style pattern matching of file paths."
 category = "dev"
 optional = false
@@ -1224,7 +1221,7 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 
 [[package]]
 name = "platformdirs"
-version = "2.5.4"
+version = "2.6.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "main"
 optional = false
@@ -1277,7 +1274,7 @@ twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.33"
+version = "3.0.36"
 description = "Library for building powerful interactive command lines in Python"
 category = "main"
 optional = false
@@ -1471,7 +1468,7 @@ test = ["pytest (>=6,!=7.0.0,!=7.0.1)", "pytest-cov (>=3.0.0)", "pytest-qt"]
 
 [[package]]
 name = "qutip"
-version = "4.7.0"
+version = "4.7.1"
 description = "QuTiP: The Quantum Toolbox in Python"
 category = "main"
 optional = false
@@ -1483,8 +1480,9 @@ packaging = "*"
 scipy = ">=1.0"
 
 [package.extras]
-full = ["cvxopt", "cvxpy (>=1.0)", "cython (>=0.29.20)", "matplotlib (>=1.2.1)", "pytest (>=5.2)", "pytest-rerunfailures"]
+full = ["cvxopt", "cvxpy (>=1.0)", "cython (>=0.29.20)", "ipython", "matplotlib (>=1.2.1)", "pytest (>=5.2)", "pytest-rerunfailures"]
 graphics = ["matplotlib (>=1.2.1)"]
+ipython = ["ipython"]
 runtime-compilation = ["cython (>=0.29.20)"]
 semidefinite = ["cvxopt", "cvxpy (>=1.0)"]
 tests = ["pytest (>=5.2)", "pytest-rerunfailures"]
@@ -1721,7 +1719,7 @@ widechars = ["wcwidth"]
 
 [[package]]
 name = "terminado"
-version = "0.17.0"
+version = "0.17.1"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
 category = "main"
 optional = false
@@ -1733,7 +1731,7 @@ pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
 tornado = ">=6.1.0"
 
 [package.extras]
-docs = ["pydata-sphinx-theme", "sphinx"]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
 test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
 
 [[package]]
@@ -1852,7 +1850,7 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.17.0"
+version = "20.17.1"
 description = "Virtual Python Environment builder"
 category = "main"
 optional = false
@@ -1898,7 +1896,7 @@ test = ["websockets"]
 
 [[package]]
 name = "widgetsnbextension"
-version = "4.0.3"
+version = "4.0.4"
 description = "Jupyter interactive widgets for Jupyter Notebook"
 category = "main"
 optional = false
@@ -1966,8 +1964,8 @@ asteval = [
     {file = "asteval-0.9.28.tar.gz", hash = "sha256:91bc7d7826bb9c33f4a5a3ef0a8a50fbd5a4695001944ff1d4e0163c413c0a91"},
 ]
 asttokens = [
-    {file = "asttokens-2.2.0-py2.py3-none-any.whl", hash = "sha256:c56caef774a929923696f09ceea0eadcb95c94b30e8ee4f9fc4f5867096caaeb"},
-    {file = "asttokens-2.2.0.tar.gz", hash = "sha256:e27b1f115daebfafd4d1826fc75f9a72f0b74bd3ae4ee4d9380406d74d35e52c"},
+    {file = "asttokens-2.2.1-py2.py3-none-any.whl", hash = "sha256:6b0ac9e93fb0335014d382b8fa9b3afa7df546984258005da0b9e7095b3deb1c"},
+    {file = "asttokens-2.2.1.tar.gz", hash = "sha256:4622110b2a6f30b77e1473affaa97e711bc2f07d3f10848420ff1898edbe94f3"},
 ]
 attrs = [
     {file = "attrs-22.1.0-py2.py3-none-any.whl", hash = "sha256:86efa402f67bf2df34f51a335487cf46b1ec130d02b8d39fd248abfd30da551c"},
@@ -1992,8 +1990,8 @@ bleach = [
     {file = "bleach-5.0.1.tar.gz", hash = "sha256:0d03255c47eb9bd2f26aa9bb7f2107732e7e8fe195ca2f64709fcf3b0a4a085c"},
 ]
 certifi = [
-    {file = "certifi-2022.9.24-py3-none-any.whl", hash = "sha256:90c1a32f1d68f940488354e36370f6cca89f0f106db09518524c88d6ed83f382"},
-    {file = "certifi-2022.9.24.tar.gz", hash = "sha256:0d9c601124e5a6ba9712dbc60d9c53c21e34f5f641fe83002317394311bdce14"},
+    {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"},
+    {file = "certifi-2022.12.7.tar.gz", hash = "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3"},
 ]
 cffi = [
     {file = "cffi-1.15.1-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:a66d3508133af6e8548451b25058d5812812ec3798c886bf38ed24a98216fab2"},
@@ -2244,8 +2242,8 @@ fastjsonschema = [
 ]
 fcspline = []
 filelock = [
-    {file = "filelock-3.8.0-py3-none-any.whl", hash = "sha256:617eb4e5eedc82fc5f47b6d61e4d11cb837c56cb4544e39081099fa17ad109d4"},
-    {file = "filelock-3.8.0.tar.gz", hash = "sha256:55447caa666f2198c5b6b13a26d2084d26fa5b115c00d065664b2124680c4edc"},
+    {file = "filelock-3.8.2-py3-none-any.whl", hash = "sha256:8df285554452285f79c035efb0c861eb33a4bcfa5b7a137016e32e6a90f9792c"},
+    {file = "filelock-3.8.2.tar.gz", hash = "sha256:7565f628ea56bfcd8e54e42bdc55da899c85c1abfe1b5bcfd147e9188cebb3b2"},
 ]
 fonttools = [
     {file = "fonttools-4.38.0-py3-none-any.whl", hash = "sha256:820466f43c8be8c3009aef8b87e785014133508f0de64ec469e4efb643ae54fb"},
@@ -2426,8 +2424,8 @@ ipython-genutils = [
     {file = "ipython_genutils-0.2.0.tar.gz", hash = "sha256:eb2e116e75ecef9d4d228fdc66af54269afa26ab4463042e33785b887c628ba8"},
 ]
 ipywidgets = [
-    {file = "ipywidgets-8.0.2-py3-none-any.whl", hash = "sha256:1dc3dd4ee19ded045ea7c86eb273033d238d8e43f9e7872c52d092683f263891"},
-    {file = "ipywidgets-8.0.2.tar.gz", hash = "sha256:08cb75c6e0a96836147cbfdc55580ae04d13e05d26ffbc377b4e1c68baa28b1f"},
+    {file = "ipywidgets-8.0.3-py3-none-any.whl", hash = "sha256:db7dd35fb1217636cbdbe0ba0bd2216d91a7695cb28b5c1dca17e62cd51378de"},
+    {file = "ipywidgets-8.0.3.tar.gz", hash = "sha256:2ec50df8538a1d4ddd5d454830d010922ad1015e81ac23efb27c0908bbc1eece"},
 ]
 jedi = [
     {file = "jedi-0.18.2-py2.py3-none-any.whl", hash = "sha256:203c1fd9d969ab8f2119ec0a3342e0b49910045abe6af0a3ae83a5764d54639e"},
@@ -2447,8 +2445,8 @@ jupyter = [
     {file = "jupyter-1.0.0.zip", hash = "sha256:3e1f86076bbb7c8c207829390305a2b1fe836d471ed54be66a3b8c41e7f46cc7"},
 ]
 jupyter-client = [
-    {file = "jupyter_client-7.4.7-py3-none-any.whl", hash = "sha256:df56ae23b8e1da1b66f89dee1368e948b24a7f780fa822c5735187589fc4c157"},
-    {file = "jupyter_client-7.4.7.tar.gz", hash = "sha256:330f6b627e0b4bf2f54a3a0dd9e4a22d2b649c8518168afedce2c96a1ceb2860"},
+    {file = "jupyter_client-7.4.8-py3-none-any.whl", hash = "sha256:d4a67ae86ee014bcb96bd8190714f6af921f2b0f52f4208b086aa5acfd9f8d65"},
+    {file = "jupyter_client-7.4.8.tar.gz", hash = "sha256:109a3c33b62a9cf65aa8325850a0999a795fac155d9de4f7555aef5f310ee35a"},
 ]
 jupyter-console = [
     {file = "jupyter_console-6.4.4-py3-none-any.whl", hash = "sha256:756df7f4f60c986e7bc0172e4493d3830a7e6e75c08750bbe59c0a5403ad6dee"},
@@ -2467,8 +2465,8 @@ jupyterlab-pygments = [
     {file = "jupyterlab_pygments-0.2.2.tar.gz", hash = "sha256:7405d7fde60819d905a9fa8ce89e4cd830e318cdad22a0030f7a901da705585d"},
 ]
 jupyterlab-widgets = [
-    {file = "jupyterlab_widgets-3.0.3-py3-none-any.whl", hash = "sha256:6aa1bc0045470d54d76b9c0b7609a8f8f0087573bae25700a370c11f82cb38c8"},
-    {file = "jupyterlab_widgets-3.0.3.tar.gz", hash = "sha256:c767181399b4ca8b647befe2d913b1260f51bf9d8ef9b7a14632d4c1a7b536bd"},
+    {file = "jupyterlab_widgets-3.0.4-py3-none-any.whl", hash = "sha256:4c9275daa6d20fc96c3aea45756ece7110850d035b0b93a6a40e918016b927da"},
+    {file = "jupyterlab_widgets-3.0.4.tar.gz", hash = "sha256:9a568e022b8bb53ab23291f6ddb52f8002b789c2c5763378cbc882be1d619be8"},
 ]
 kiwisolver = [
     {file = "kiwisolver-1.4.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:2f5e60fabb7343a836360c4f0919b8cd0d6dbf08ad2ca6b9cf90bf0c76a3c4f6"},
@@ -2707,8 +2705,8 @@ nbclient = [
     {file = "nbclient-0.6.3.tar.gz", hash = "sha256:b80726fc1fb89a0e8f8be1e77e28d0026b1e8ed90bc143c8a0c7622e4f8cdd9e"},
 ]
 nbconvert = [
-    {file = "nbconvert-7.2.5-py3-none-any.whl", hash = "sha256:3e90e108bb5637b5b8a1422af1156af1368b39dd25369ff7faa7dfdcdef18f81"},
-    {file = "nbconvert-7.2.5.tar.gz", hash = "sha256:8fdc44fd7d9424db7fdc6e1e834a02f6b8620ffb653767388be2f9eb16f84184"},
+    {file = "nbconvert-7.2.6-py3-none-any.whl", hash = "sha256:f933e82fe48b9a421e4252249f6c0a9a9940dc555642b4729f3f1f526bb16779"},
+    {file = "nbconvert-7.2.6.tar.gz", hash = "sha256:c9c0e4b26326f7658ebf4cda0acc591b9727c4e3ee3ede962f70c11833b71b40"},
 ]
 nbformat = [
     {file = "nbformat-5.7.0-py3-none-any.whl", hash = "sha256:1b05ec2c552c2f1adc745f4eddce1eac8ca9ffd59bb9fd859e827eaa031319f9"},
@@ -2761,8 +2759,8 @@ opt-einsum = [
     {file = "opt_einsum-3.3.0.tar.gz", hash = "sha256:59f6475f77bbc37dcf7cd748519c0ec60722e91e63ca114e68821c0c54a46549"},
 ]
 packaging = [
-    {file = "packaging-21.3-py3-none-any.whl", hash = "sha256:ef103e05f519cdc783ae24ea4e2e0f508a9c99b2d4969652eed6a2e1ea5bd522"},
-    {file = "packaging-21.3.tar.gz", hash = "sha256:dd47c42927d89ab911e606518907cc2d3a1f38bbd026385970643f9c5b8ecfeb"},
+    {file = "packaging-22.0-py3-none-any.whl", hash = "sha256:957e2148ba0e1a3b282772e791ef1d8083648bc131c8ab0c1feba110ce1146c3"},
+    {file = "packaging-22.0.tar.gz", hash = "sha256:2198ec20bd4c017b8f9717e00f0c8714076fc2fd93816750ab48e2c41de2cfd3"},
 ]
 pandas = [
     {file = "pandas-1.5.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:e9dbacd22555c2d47f262ef96bb4e30880e5956169741400af8b306bbb24a273"},
@@ -2802,8 +2800,8 @@ parso = [
     {file = "parso-0.8.3.tar.gz", hash = "sha256:8c07be290bb59f03588915921e29e8a50002acaf2cdc5fa0e0114f91709fafa0"},
 ]
 pathspec = [
-    {file = "pathspec-0.10.2-py3-none-any.whl", hash = "sha256:88c2606f2c1e818b978540f73ecc908e13999c6c3a383daf3705652ae79807a5"},
-    {file = "pathspec-0.10.2.tar.gz", hash = "sha256:8f6bf73e5758fd365ef5d58ce09ac7c27d2833a8d7da51712eac6e27e35141b0"},
+    {file = "pathspec-0.10.3-py3-none-any.whl", hash = "sha256:3c95343af8b756205e2aba76e843ba9520a24dd84f68c22b9f93251507509dd6"},
+    {file = "pathspec-0.10.3.tar.gz", hash = "sha256:56200de4077d9d0791465aa9095a01d421861e405b5096955051deefd697d6f6"},
 ]
 patsy = [
     {file = "patsy-0.5.3-py2.py3-none-any.whl", hash = "sha256:7eb5349754ed6aa982af81f636479b1b8db9d5b1a6e957a6016ec0534b5c86b7"},
@@ -2881,8 +2879,8 @@ pillow = [
     {file = "Pillow-9.3.0.tar.gz", hash = "sha256:c935a22a557a560108d780f9a0fc426dd7459940dc54faa49d83249c8d3e760f"},
 ]
 platformdirs = [
-    {file = "platformdirs-2.5.4-py3-none-any.whl", hash = "sha256:af0276409f9a02373d540bf8480021a048711d572745aef4b7842dad245eba10"},
-    {file = "platformdirs-2.5.4.tar.gz", hash = "sha256:1006647646d80f16130f052404c6b901e80ee4ed6bef6792e1f238a8969106f7"},
+    {file = "platformdirs-2.6.0-py3-none-any.whl", hash = "sha256:1a89a12377800c81983db6be069ec068eee989748799b946cce2a6e80dcc54ca"},
+    {file = "platformdirs-2.6.0.tar.gz", hash = "sha256:b46ffafa316e6b83b47489d240ce17173f123a9b9c83282141c3daf26ad9ac2e"},
 ]
 portalocker = [
     {file = "portalocker-2.6.0-py2.py3-none-any.whl", hash = "sha256:102ed1f2badd8dec9af3d732ef70e94b215b85ba45a8d7ff3c0003f19b442f4e"},
@@ -2897,8 +2895,8 @@ prometheus-client = [
     {file = "prometheus_client-0.15.0.tar.gz", hash = "sha256:be26aa452490cfcf6da953f9436e95a9f2b4d578ca80094b4458930e5f584ab1"},
 ]
 prompt-toolkit = [
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+    {file = "qutip-4.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9df66605cf383596020a08bcca267b2dd8623d42b188f9068b7e1c813bbb8f21"},
+    {file = "qutip-4.7.1-cp39-cp39-win_amd64.whl", hash = "sha256:fd2c970e2134161ceb5a540a34f99355a6f4feccd4ec0b401ce2ff4bf5eba87d"},
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@@ -3308,8 +3305,8 @@ tabulate = [
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@@ -3357,8 +3354,8 @@ urllib3 = [
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@@ -3373,8 +3370,8 @@ websocket-client = [
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 zipp = [
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python/otto_motor/speed_coupling_scan.py

@@ -44,7 +44,7 @@ prototype = OttoEngine(
     T=[1, 4],
     therm_methods=["tanhsinh", "tanhsinh"],
     Δ=1,
-    num_cycles=4,
+    num_cycles=5,
     Θ=1.5 / 0.05,
     dt=0.01/5,
     timings_H=p_H,
@@ -53,7 +53,7 @@ prototype = OttoEngine(
     shift_to_resonance=(False, False),
 )
 
-δs = np.round(np.linspace(.1, .5, 3), 3)
+δs = np.round(np.linspace(.3, .5, 3), 3)
 τ_Is = np.round(np.linspace(.01, .3, 3), 3)
 τ_Is